View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3580_high_1 (Length: 290)

Name: NF3580_high_1
Description: NF3580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3580_high_1
NF3580_high_1
[»] chr7 (5 HSPs)
chr7 (19-183)||(48635852-48636012)
chr7 (192-243)||(9805434-9805485)
chr7 (192-251)||(35081601-35081660)
chr7 (193-251)||(35080283-35080341)
chr7 (192-242)||(23621990-23622040)
[»] chr2 (5 HSPs)
chr2 (192-251)||(27552451-27552510)
chr2 (192-251)||(12812835-12812894)
chr2 (193-243)||(27553815-27553865)
chr2 (196-241)||(10853155-10853200)
chr2 (192-240)||(10851912-10851960)
[»] chr4 (4 HSPs)
chr4 (192-251)||(8747690-8747749)
chr4 (192-251)||(8749046-8749105)
chr4 (193-251)||(33997896-33997954)
chr4 (192-251)||(8896953-8897012)
[»] chr5 (5 HSPs)
chr5 (192-251)||(124529-124588)
chr5 (193-251)||(5504136-5504194)
chr5 (192-251)||(5502917-5502975)
chr5 (193-249)||(3598924-3598980)
chr5 (192-251)||(121348-121407)
[»] chr3 (7 HSPs)
chr3 (192-251)||(51220602-51220661)
chr3 (193-251)||(10584082-10584140)
chr3 (193-251)||(32829740-32829798)
chr3 (193-249)||(26722533-26722589)
chr3 (192-243)||(53157184-53157234)
chr3 (193-251)||(51219462-51219520)
chr3 (192-241)||(32831100-32831149)
[»] chr1 (4 HSPs)
chr1 (193-251)||(46312065-46312123)
chr1 (192-241)||(3000223-3000272)
chr1 (193-243)||(46525850-46525900)
chr1 (193-241)||(2999491-2999539)
[»] chr8 (3 HSPs)
chr8 (192-241)||(13883878-13883927)
chr8 (192-249)||(38612218-38612275)
chr8 (192-249)||(38613419-38613476)
[»] chr6 (1 HSPs)
chr6 (196-251)||(22417661-22417716)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 48635852 - 48636012
Alignment:
Q  19 agttgaagcacatgttgtaagctgaataccatgagaaaatcataacaaggcttgatttcattcattcattcataaacaatgcattcagtgtacgtacctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||||||    
T  48635852 agttgaagcacatgttgtaagctgaataccatgagaaaatcataacaaggcttgatttcattcattcattcataaacaatgcattcatt----gtacctc 48635947  T
Q  119 ctccacaagtgtctcacaagccgtcaacttctactatatgcaacaatagagtacagttttagcaa 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48635948 ctccacaagtgtctcacaagccgtcaacttctactatatgcaacaatagagtacagttttagcaa 48636012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 9805485 - 9805434
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 243  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  9805485 aggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggc 9805434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 35081660 - 35081601
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    |||||||||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||    
T  35081660 aggctaaactacagttttgaccccctaagtttgtcaatgttgcgattttggcgccctaat 35081601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 35080283 - 35080341
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||||||| ||| ||||||||||||| ||||||||  |||||||    
T  35080283 ggctaaactacagttttgaccccctaagtttgccaatgttgcgattttggtcccctaat 35080341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 23622040 - 23621990
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttgg 242  Q
    ||||||||||||||||||| || | ||| ||||||||||||| ||||||||    
T  23622040 aggctaaactacagttttggcctcctaagtttgccaatgttgcgattttgg 23621990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 27552451 - 27552510
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  27552451 aggctaaactacagttttgaccccctaaatttgccaatgttgcgattttggctccctaat 27552510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 12812835 - 12812894
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||    
T  12812835 aggctaagctacagttttgacctcttaagtttgctaatgttgagattttggccccctaat 12812894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 27553865 - 27553815
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 243  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||| |||||||||    
T  27553865 ggctaaactacagttttaaccccctaagtttgctaatgttgcgattttggc 27553815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 10853200 - 10853155
Alignment:
Q  196 taaactacagttttgaccccttaaatttgccaatgttgtgattttg 241  Q
    |||||||||||||||||||||||| |||  |||||||| |||||||    
T  10853200 taaactacagttttgaccccttaactttatcaatgttgcgattttg 10853155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 10851912 - 10851960
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgatttt 240  Q
    |||||||||||||||||||||||| ||| |||  |||||||| ||||||    
T  10851912 aggctaaactacagttttgaccccctaactttatcaatgttgcgatttt 10851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 8747690 - 8747749
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||    
T  8747690 aggctaaactacagttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8747749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 8749105 - 8749046
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |||||||    
T  8749105 aggctaaactacacttttgaccccttaagtttgccaatgttgcgattttggccccctaat 8749046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 33997954 - 33997896
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||||||| ||| ||||| ||||||| ||||||| | |||||||    
T  33997954 ggctaaactacagttttgaccccctaagtttgctaatgttgcgattttgaccccctaat 33997896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 8897012 - 8896953
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||||| || ||| ||||||||||||  ||||||||  |||||||    
T  8897012 aggctaaactacagttttgactccctaagtttgccaatgttacgattttggtcccctaat 8896953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 124588 - 124529
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    |||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||    
T  124588 aggctaaactacagttttgacctcttaagtttgccaatgttgcgattttggccccctaat 124529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 5504194 - 5504136
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||||    
T  5504194 ggctaaactacagttttgacctcttaagtttgccaatgttgcgattttgaccccctaat 5504136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 5502917 - 5502975
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    |||||||||||||||||||| ||||||| |||||||||||||  |||||||| |||||||    
T  5502917 aggctaaactacagttttga-cccttaagtttgccaatgttgcaattttggccccctaat 5502975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 3598980 - 3598924
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 249  Q
    ||||||||||||||||||  ||| ||||||| ||||||||| ||||||||| |||||    
T  3598980 ggctaaactacagttttggtcccctaaatttaccaatgttgcgattttggcccccta 3598924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 121348 - 121407
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||||| |  |||||||||||||||||  |||||| | |||||||    
T  121348 aggctaaactacagttttgacactctaaatttgccaatgttgcaattttgaccccctaat 121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 51220661 - 51220602
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||| || |||||||    
T  51220661 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttagccccctaat 51220602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 10584140 - 10584082
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||| ||| ||| ||||||||||||| ||||||||| |||||||    
T  10584140 ggctaaactacagttttgatcccctaagtttgccaatgttgcgattttggccccctaat 10584082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 32829740 - 32829798
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| |||||||    
T  32829740 ggctaaactacagttttgaccccctaagtttgccaattttgcgattttggccccctaat 32829798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 26722533 - 26722589
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 249  Q
    |||||||||||||||||| |||| ||| ||| ||||||||| ||||||||| |||||    
T  26722533 ggctaaactacagttttggccccctaagtttaccaatgttgcgattttggcccccta 26722589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 53157234 - 53157184
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 243  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||| ||||    
T  53157234 aggctaaactacagttttgacccc-taagtttgccaatgttgcgattctggc 53157184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 51219462 - 51219520
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||||| | ||| |||| ||||||||  |||||||| |||||||    
T  51219462 ggctaaactacagttttgacctcctaagtttgtcaatgttgcaattttggccccctaat 51219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 32831149 - 32831100
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 241  Q
    |||||||||||||||||||||||| ||  |||| |||||||| |||||||    
T  32831149 aggctaaactacagttttgaccccctatgtttgtcaatgttgcgattttg 32831100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Original strand, 46312065 - 46312123
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| ||||||||| |||||||    
T  46312065 ggctaaactacagttttgaccccctaactttaccaatgttgcgattttggccccctaat 46312123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 3000272 - 3000223
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 241  Q
    |||||||||||||||||||||||||||| ||||  ||||||| |||||||    
T  3000272 aggctaaactacagttttgaccccttaattttgttaatgttgcgattttg 3000223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 46525900 - 46525850
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggc 243  Q
    |||||| ||||||||||| |||| ||| ||||||||||||| |||||||||    
T  46525900 ggctaatctacagttttggccccctaagtttgccaatgttgcgattttggc 46525850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 2999491 - 2999539
Alignment:
Q  193 ggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 241  Q
    ||||||||||||||||||||||  ||| |||| |||||||| |||||||    
T  2999491 ggctaaactacagttttgaccctctaactttgtcaatgttgcgattttg 2999539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 13883927 - 13883878
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttg 241  Q
    |||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  13883927 aggctaaactacagttttgaccccttaagtttgtcaatgttgcgattttg 13883878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 38612218 - 38612275
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 249  Q
    |||||||||| ||||||||||||| ||| |||  |||||||| ||||||||| |||||    
T  38612218 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38612275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 38613476 - 38613419
Alignment:
Q  192 aggctaaactacagttttgaccccttaaatttgccaatgttgtgattttggctcccta 249  Q
    |||||||||| ||||||||||||| ||| |||  |||||||| ||||||||| |||||    
T  38613476 aggctaaactgcagttttgaccccctaactttcacaatgttgcgattttggcccccta 38613419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 22417661 - 22417716
Alignment:
Q  196 taaactacagttttgaccccttaaatttgccaatgttgtgattttggctccctaat 251  Q
    |||||||||||||||||||| ||| ||||| ||||||  ||||||||| |||||||    
T  22417661 taaactacagttttgaccccctaagtttgctaatgttacgattttggccccctaat 22417716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University