View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3580_low_2 (Length: 245)
Name: NF3580_low_2
Description: NF3580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3580_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 12024608 - 12024836
Alignment:
| Q |
1 |
aaaaatcagtttttcctcaataatttggtcagaaaataaataaaaagttagctttcatttttcacatgaaaat---aataagcacatcaattaacagtaa |
97 |
Q |
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| T |
12024608 |
aaaaatcagtttttcctcaataatttggtcagaaaataaataaaaagttagctttcatttttcatatgaaaatcagaataagcacatcaattaacagtaa |
12024707 |
T |
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| Q |
98 |
tcttggtcagataaagaaacatattagtcaaaacagtaatttacactataattaaactgattcaacggtcgcttatattcttcgcatcgcactcatcaaa |
197 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |
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| T |
12024708 |
tcttggtcatataaagaaacatattggtcaaaacagtaatttacactataattaaactgattcaacggtctcttatattct-----tcgcactcgtcaaa |
12024802 |
T |
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| Q |
198 |
taaaataaaatcaaactaaaccaaatcacaaata |
231 |
Q |
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| T |
12024803 |
tcaaataaaatcaaactaaaccaaatcacaaata |
12024836 |
T |
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