View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3580_low_4 (Length: 214)

Name: NF3580_low_4
Description: NF3580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3580_low_4
NF3580_low_4
[»] chr3 (10 HSPs)
chr3 (18-203)||(2807188-2807373)
chr3 (18-173)||(2759165-2759320)
chr3 (18-174)||(2838632-2838788)
chr3 (18-174)||(2769019-2769175)
chr3 (24-180)||(2855848-2856004)
chr3 (21-173)||(2748946-2749098)
chr3 (18-196)||(2790295-2790473)
chr3 (18-196)||(2797289-2797467)
chr3 (18-162)||(2818519-2818663)
chr3 (24-199)||(5412811-5412986)
[»] scaffold0691 (1 HSPs)
scaffold0691 (20-174)||(6186-6340)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 2807373 - 2807188
Alignment:
Q  18 agacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  2807373 agacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggaattcaaatcctacaattt 2807274  T
Q  118 ctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgcttgatgat 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  2807273 ctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctagtgctgttgcggcttgatgat 2807188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 2759320 - 2759165
Alignment:
Q  18 agacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaattt 117  Q
    ||||| |||||||||||||| |||||||| ||||| ||||||  |||||||||||||||| || | | ||||||| ||||||||||||||||||||||||    
T  2759320 agaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatatagttcttcttttgggccttcaaatcctacaattt 2759221  T
Q  118 ctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttct 173  Q
    || |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2759220 ctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttct 2759165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 2838632 - 2838788
Alignment:
Q  18 agacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaattt 117  Q
    ||||| |||||||||||||| || || || |||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||||||||||||||    
T  2838632 agaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttcttctcttgggccttcaaatcctacaattt 2838731  T
Q  118 ctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctg 174  Q
    || |||||||||| |||||||||||||||||||| ||  ||||||||||||||||||    
T  2838732 ctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctg 2838788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 2769175 - 2769019
Alignment:
Q  18 agacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaattt 117  Q
    ||||| |||||||||||||| || ||||| ||||||| |||| ||||||||||||||||| || | | |||||||||||||||||| |||||||||||||    
T  2769175 agaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattcttctcttgggccttccaatcctacaattt 2769076  T
Q  118 ctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctg 174  Q
    || ||||||||||||| ||||||||||  ||||||||||||||||||||| ||||||    
T  2769075 ctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttctg 2769019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 2855848 - 2856004
Alignment:
Q  24 cccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctcttt 123  Q
    |||||||| ||||| ||||||||  ||||||||| || ||| |||||||||||| |||||| ||||||| ||||||||||||  ||||||| |||| |||    
T  2855848 cccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattcttcttttgggccttcaatgcctacaacttctgttt 2855947  T
Q  124 cttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctc 180  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2855948 cttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctc 2856004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 2749098 - 2748946
Alignment:
Q  21 cctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctc 120  Q
    ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||||| ||||||  || |||| ||||     
T  2749098 cctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttgggacttcaataccaacaacttctg 2748999  T
Q  121 tttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttct 173  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||||||||    
T  2748998 tttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttct 2748946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 2790473 - 2790295
Alignment:
Q  18 agacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaattt 117  Q
    |||||||||||||| ||||| |||||||| ||||||||||||   ||||||||||||||| |||||| |||||| || |||||||||||||| ||||||     
T  2790473 agacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggccttcaaatccgacaattg 2790374  T
Q  118 ctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgct 196  Q
    |  |||||||||| |||||||||||||  ||||||||| ||||||||| ||| || || |||||| |||||||||||||    
T  2790373 cagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgct 2790295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 2797467 - 2797289
Alignment:
Q  18 agacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaattt 117  Q
    |||||||||||||| ||||| |||||||| ||||||||||||   ||||| | ||||||| |||||| |||||| || |||||||||||||| ||||||     
T  2797467 agacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttccctcgggccttcaaatccgacaattg 2797368  T
Q  118 ctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgct 196  Q
    |  |||||||||||||||||||||||||||||||||||| |||||||| ||| || || |||||| |||||||| ||||    
T  2797367 cagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctctactgctgttgttgct 2797289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 2818663 - 2818519
Alignment:
Q  18 agacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaattt 117  Q
    ||||| |||||||||||||| || ||||| |||||||| ||| ||||||||||||||||| || | | ||||||||| ||||||||||||||||| ||||    
T  2818663 agaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttcttctctcgggccttcaaatcctacgattt 2818564  T
Q  118 ctctttcttcaataaaaagggaagacagtcgaggatcacgccatc 162  Q
    || |||||||||| ||||| |||||||||||||||||||||||||    
T  2818563 ctgtttcttcaatgaaaagagaagacagtcgaggatcacgccatc 2818519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 5412986 - 5412811
Alignment:
Q  24 cccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttctcttt 123  Q
    |||||||||||||| || || || || || || ||| |||| |||||||||||| |||||| ||||||| |||| ||||||| |||||||| |||| |||    
T  5412986 cccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattcttcttttggaccttcaattcctacaacttctgttt 5412887  T
Q  124 cttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtttctctagtgctgttgctgcttga 199  Q
    ||  ||| || |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||    
T  5412886 ctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctctactgctgttgctgcttga 5412811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 6186 - 6340
Alignment:
Q  20 acctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctcttgggccttcaaatcctacaatttct 119  Q
    |||||||||||||||||| ||||| || ||||||||||||  || ||||||||||||| || | | ||| |||||||||||||| |||||||||| |||     
T  6186 acctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatataattcctctcttgggccttcgaatcctacaacttca 6285  T
Q  120 ctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctg 174  Q
     |||||||||||||||||| ||| | |||||||||||||||||||||||||||||    
T  6286 gtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctg 6340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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