View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3581_high_11 (Length: 250)
Name: NF3581_high_11
Description: NF3581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3581_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 31444794 - 31444938
Alignment:
| Q |
16 |
atgtatgacttaaacattaggataacatatacagttgccaaaatatgcaagcctaaggagttaattcatgtttttattttgaaatgtgcaggtttgaatt |
115 |
Q |
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| T |
31444794 |
atgtatgacttaaacattaggataacatatatagttgccaaaatatgcaaacctaaggagttaattcatgttttaattttgaaactggcaggtttgaatt |
31444893 |
T |
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| Q |
116 |
cctcttcatatgtgcttctaaattctaggactgatgatgaattca |
160 |
Q |
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| T |
31444894 |
cctcttcatatgtgcttctaaattctaggactgatgatgagttca |
31444938 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 31445223 - 31445304
Alignment:
| Q |
173 |
aaaaatatggtttattgtgaggactaattgttcttttaactttg----ttatagacaaaaatcaataacctggaccagctgc |
250 |
Q |
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| T |
31445223 |
aaaaatatggtttattgtgatgactaattgttcttttaactttgttaattatagacaaaaatcaatgacctggaccagctgc |
31445304 |
T |
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