View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3581_high_13 (Length: 236)
Name: NF3581_high_13
Description: NF3581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3581_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 31445316 - 31445525
Alignment:
| Q |
1 |
cttgtcaaactgattggttactgcttagaggatgtccaccggccacttttggtatatgaattttttagcatgggaagtttggataaccatttgtttagaa |
100 |
Q |
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| T |
31445316 |
cttgtcaaactgattggttactgcttagaggttgtccaccggccactcttggtatatgaattttttaccatgggatgtttggacaaccatttgtttagaa |
31445415 |
T |
|
| Q |
101 |
gtatgtcgttaaatttaatccttc---tattgttgtcaaattattatttttacttatcctttgaatatgaatcgacttcaagctcaagagaaactaggga |
197 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||| | || | |||| |||||| |
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| T |
31445416 |
gtatgtcgttaaatttaatccttctattattgttgtcaaattattaattttgcttatcgtttgaatatgaatcgacttcagacacatg-gaaaataggga |
31445514 |
T |
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| Q |
198 |
agtagtttata |
208 |
Q |
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||||||||||| |
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| T |
31445515 |
agtagtttata |
31445525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 30421832 - 30421946
Alignment:
| Q |
7 |
aaactgattggttactgcttagaggatgtccaccggccacttttggtatatgaattttttagcatgggaagtttggataaccatttgtttagaagtatgt |
106 |
Q |
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|||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| | | || ||||||||||||||| ||||||||||||||||||| |
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| T |
30421832 |
aaactgataggttactgcttagaggatgactaccgga---ttttggtatatgaatttgtgaccaagggaagtttggataatcatttgtttagaagtatgt |
30421928 |
T |
|
| Q |
107 |
cgttaaatttaatccttc |
124 |
Q |
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|||| ||| ||||||| |
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| T |
30421929 |
tattaactttcatccttc |
30421946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 30411585 - 30411625
Alignment:
| Q |
72 |
gggaagtttggataaccatttgtttagaagtatgtcgttaa |
112 |
Q |
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| T |
30411585 |
gggaagtttggataatcatttgtttagaagtatgttgttaa |
30411625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 30401441 - 30401535
Alignment:
| Q |
9 |
actgattggttactgcttagaggatgtccaccggccacttttggtatatgaattttttagcatgggaagtttggataaccatttgtttagaagtatgt |
106 |
Q |
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|||||||||||||||||||||||||||| || ||| ||||||||||||||| ||| || ||||||||| || || |||||||| |||||||| |
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| T |
30401441 |
actgattggttactgcttagaggatgtctac---ccaattttggtatatgaatatttggacaagggaagttttgacaaatgtttgtttaaaagtatgt |
30401535 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 30404798 - 30404857
Alignment:
| Q |
47 |
ttttggtatatgaattttttagcatgggaagtttggataaccatttgtttagaagtatgt |
106 |
Q |
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||||||||||||||||| ||| || ||||||||| ||||| | |||||||| |||||||| |
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| T |
30404798 |
ttttggtatatgaatttcttaccaagggaagtttagataatcttttgtttaaaagtatgt |
30404857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 30408624 - 30408726
Alignment:
| Q |
7 |
aaactgattggttactgcttagaggatgtccaccggccacttttggtatatgaattttttagcatgggaagtttggataaccatttgtttagaagtatgt |
106 |
Q |
| |
|
||||||||||||||||||||||||| | | | ||| |||| |||||||||||| | | || |||| ||||||||| ||||||||||||||||||| |
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| T |
30408624 |
aaactgattggttactgcttagagggttcctatcgga---ttttagtatatgaatttgtgaccaaaggaaatttggataatcatttgtttagaagtatgt |
30408720 |
T |
|
| Q |
107 |
cgttaa |
112 |
Q |
| |
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||||| |
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|
| T |
30408721 |
tgttaa |
30408726 |
T |
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