View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3581_high_3 (Length: 348)
Name: NF3581_high_3
Description: NF3581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3581_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 49871443 - 49871130
Alignment:
| Q |
17 |
catagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49871443 |
catagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaa |
49871344 |
T |
|
| Q |
117 |
cattcagtaagttactaatgcaatgtttaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatttgacaggtgtgaactc |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49871343 |
cattcagtaagttactaatgcaatgattaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaa-ttgacaggtgtgaactc |
49871245 |
T |
|
| Q |
217 |
tgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaagcattgttc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49871244 |
tgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaagcattgttc |
49871145 |
T |
|
| Q |
317 |
tacaactgcgaaatg |
331 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
49871144 |
tacaactgtgaaatg |
49871130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 49865511 - 49865200
Alignment:
| Q |
18 |
atagggaccatgttactattattggtgatggtcccaaaaagaccatatttactggtagcaaaagctatggtgatggtgtgcagacttacaataccgcaac |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49865511 |
atagggaccatgttactattattggcgatggtcccacaaagaccatatttactggcagcaaaagctatgctgatggtgtgcagacttacaataccgcaac |
49865412 |
T |
|
| Q |
118 |
attcagtaagttacta----------atgcaatgtttaatatttagcatctgttcctaagttgtaagttgtaatgatcgatttgttattaatttgacagg |
207 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| | |||| | || ||||||||||| |||| |||||||||||| | |||| |
|
|
| T |
49865411 |
attcggtaagttactactcaattttaatgcaatgtttaatat---ggatctctaaaaaa-ttgtaagttgtgtatatcgggttgttattaattgg-cagg |
49865317 |
T |
|
| Q |
208 |
tgtgaactctgcccatttcacggcctttaacgtcggattcgagaactcagccggtgccgcaaagcatcaagcagtggccctccgtgtaacagcagacaaa |
307 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
49865316 |
tgtgaactctgcccatttcaccgccttgaacgtcggatttgagaactcagccggtgccgcaaagcaccaagcagtggccctccgtgtaacagcagacaaa |
49865217 |
T |
|
| Q |
308 |
gcattgttctacaactg |
324 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
49865216 |
gcattgttctacaactg |
49865200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 13960326 - 13960384
Alignment:
| Q |
272 |
catcaagcagtggccctccgtgtaacagcagacaaagcattgttctacaactgcgaaat |
330 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||| | |||||||||||| |||| |
|
|
| T |
13960326 |
catcaagcagttgcactccgagtaacagcagacaaagcaatcttctacaactgccaaat |
13960384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University