View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3581_high_5 (Length: 343)
Name: NF3581_high_5
Description: NF3581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3581_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 37347058 - 37346743
Alignment:
| Q |
15 |
aaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaa |
114 |
Q |
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||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
37347058 |
aaagaaagagctgattttacaataagagaaatgggtctgcaagatgcaatcaacacaagaataggagggtggggtgttaaaggaataagtgggggtcaaa |
37346959 |
T |
|
| Q |
115 |
aaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346958 |
aaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgt |
37346859 |
T |
|
| Q |
215 |
tatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346858 |
tatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccat |
37346759 |
T |
|
| Q |
315 |
aatctttgtcttttgt |
330 |
Q |
| |
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|||||||||||||||| |
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| T |
37346758 |
aatctttgtcttttgt |
37346743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 37330540 - 37330858
Alignment:
| Q |
8 |
agagatgaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtggg |
107 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37330540 |
agagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatgaacacaagaattggagggtggggtgtgaaaggcataagtggg |
37330639 |
T |
|
| Q |
108 |
ggtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttctt |
207 |
Q |
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||||||||||||||||||||||||| ||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37330640 |
ggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttctttttcttgatgagccaactagtggacttgatagtgctgcttctt |
37330739 |
T |
|
| Q |
208 |
actatgttatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaact |
307 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| || | || ||||||||||| |||||||||||||||||||| |
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| T |
37330740 |
actatgttatgaaaagaattgcttccttggacaaaaaggatggaattcaaaggacaattattacatccatccatcaacctagtactgaagtttttcaact |
37330839 |
T |
|
| Q |
308 |
tttccataatctttgtctt |
326 |
Q |
| |
|
|| ||||| ||||||||| |
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| T |
37330840 |
ctttcataacctttgtctt |
37330858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 37321618 - 37321936
Alignment:
| Q |
8 |
agagatgaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtggg |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37321618 |
agagaagaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatgaacacaagaattggagggtggggtgtgaaaggcataagtggg |
37321717 |
T |
|
| Q |
108 |
ggtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttctt |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37321718 |
ggtcaaaaaaggagagttagcatttgcattgagatcctaacacgtcctagacttctatttcttgatgagccaactagtggacttgatagtgctgcttctt |
37321817 |
T |
|
| Q |
208 |
actatgttatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaact |
307 |
Q |
| |
|
||||||||||||||||||| ||| | ||||| | || |||||||||| ||||| ||| || | || ||||||||||| |||||||||||||||||||| |
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|
| T |
37321818 |
actatgttatgaaaagaattgctactttggatcataaagatggaattcggaggactattattacatccatccatcaacctagtactgaagtttttcaact |
37321917 |
T |
|
| Q |
308 |
tttccataatctttgtctt |
326 |
Q |
| |
|
||| ||||| || |||||| |
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|
| T |
37321918 |
ttttcataacctatgtctt |
37321936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 8 - 326
Target Start/End: Complemental strand, 19544900 - 19544582
Alignment:
| Q |
8 |
agagatgaaagagagagctgatattacaatcaaagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtggg |
107 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||||| |
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| T |
19544900 |
agagaagaaagagagagctgattttacaatcagagaaatgggtctgcaagatgctactaacacaataattggaggatggggtgttaaaggcataagtgga |
19544801 |
T |
|
| Q |
108 |
ggtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttctt |
207 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
19544800 |
ggtcagaaaaggagagttagcatttgcattgagatccttacacgtccaaaacttctttttcttgatgaaccaacaagtggacttgatagtgctgcttctt |
19544701 |
T |
|
| Q |
208 |
actatgttatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaact |
307 |
Q |
| |
|
|||||||||||| |||||| ||| ||||||| | || ||||| ||||| ||||| ||| || | || ||||||||||| |||| |||||||||||||| |
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| T |
19544700 |
actatgttatgacaagaattgctaccttggatcataaagatggtattcagaggactattattacttccatccatcaacctggtaccgaagtttttcaact |
19544601 |
T |
|
| Q |
308 |
tttccataatctttgtctt |
326 |
Q |
| |
|
||| || || ||||||||| |
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|
| T |
19544600 |
ttttcacaacctttgtctt |
19544582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 37343185 - 37343299
Alignment:
| Q |
218 |
gaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaatccatc--aaccaagtactgaagtttttcaacttttccata |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||||||| |||| |
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|
| T |
37343185 |
gaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattattgcctcaatccatcaaaacctagtaatgaagcttttcaactttttcata |
37343284 |
T |
|
| Q |
316 |
atctttgtcttttgt |
330 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
37343285 |
atctttgtctcttgt |
37343299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 37298256 - 37298434
Alignment:
| Q |
41 |
agaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttccattgag |
140 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||| ||||||||| ||| |||||| |||| ||||| |||| ||||||| | ||||||| ||||||| |
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| T |
37298256 |
agaaatgggcctgcaggatgctattaacacaagggttggagggtatggttccaaaggcctaagcggggggcaaagaaggagactaagcatttgcattgag |
37298355 |
T |
|
| Q |
141 |
attcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatga |
219 |
Q |
| |
|
||||| || | || |||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
37298356 |
attctaactcaccctagacttcttttccttgatgaaccaactagtggacttgatagtgcagcttcctactatgttatga |
37298434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 326
Target Start/End: Original strand, 37291163 - 37291423
Alignment:
| Q |
66 |
aacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctat |
165 |
Q |
| |
|
|||||||| ||||||| |||||| ||||| ||||||| || |||| || ||| ||||||||| ||| |||||||| || || || |||||||| | |
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|
| T |
37291163 |
aacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttctct |
37291262 |
T |
|
| Q |
166 |
ttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccat |
265 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| |||| || ||| | || ||| |||||||||||||| || |
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|
| T |
37291263 |
tccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatgagtggaattgcacgtttgaatttaagggacggaattcaaaggactat |
37291362 |
T |
|
| Q |
266 |
tgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccataatctttgtctt |
326 |
Q |
| |
|
||||| || ||||||||||| || | |||| ||||| ||||||| ||| | ||||||||| |
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|
| T |
37291363 |
tgttgtatccatccatcaacctagcagtgaactttttgaactttttcatgacctttgtctt |
37291423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 37298467 - 37298525
Alignment:
| Q |
252 |
attcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaactttt |
310 |
Q |
| |
|
||||||||||| |||||||| || || ||||| || |||| |||||||||||||||||| |
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|
| T |
37298467 |
attcaaaggacaattgttgcatccatacatcagcctagtagtgaagtttttcaactttt |
37298525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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