View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3581_low_14 (Length: 242)

Name: NF3581_low_14
Description: NF3581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3581_low_14
NF3581_low_14
[»] chr5 (2 HSPs)
chr5 (131-228)||(15987518-15987615)
chr5 (18-62)||(15987687-15987731)
[»] chr8 (1 HSPs)
chr8 (161-216)||(26190645-26190700)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 15987615 - 15987518
Alignment:
Q  131 gttcgatctcctccgacaccacactctcaatcgaaacctccatccctttcaccgctcacaactgcactccaccttccaccaccgtctccacaaccccc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  15987615 gttcgatctcctccgacaccacactctcaatcgaaacctccatccctttcaccgcccacaactgcactccaccttccaccaccgtcaccacaaccccc 15987518  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 15987731 - 15987687
Alignment:
Q  18 tctctgttgctgtaacagagaaatcaaaatggcactatcacgatt 62  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  15987731 tctctgttgcggtaacagagaaatcaaaatggcactatcacgatt 15987687  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 26190700 - 26190645
Alignment:
Q  161 tcgaaacctccatccctttcaccgctcacaactgcactccaccttccaccaccgtc 216  Q
    ||||||||||||||||||||||  | |||||||||   ||||||||||||||||||    
T  26190700 tcgaaacctccatccctttcacttcccacaactgcgaaccaccttccaccaccgtc 26190645  T

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