View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3581_low_9 (Length: 308)
Name: NF3581_low_9
Description: NF3581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3581_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 36423566 - 36423286
Alignment:
| Q |
20 |
ctagggtcgggtttgagatgaaattcccaattagcccatttcaccaaatgtccatcaactgtaaagcttggaccttttggttgttccaaggaaattggat |
119 |
Q |
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| T |
36423566 |
ctagggtcgggtttgagatgaaattcccaattagcccatttcaccaaatgtccatcaactgtaaagcttggaccttttggttgttccaaggaaattggat |
36423467 |
T |
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| Q |
120 |
ttatcaagttcaactctccgttgagtttctgaactgagtaacggtaatcagtgtcgataccatttgcgacaggaatgtttagtccattatctgtaatgga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423466 |
ttatcaagttcaactctccgttgagtttctgaactgagtaacggtaatcagtgtcgataccatttgcgacaggaatgtttagtccattatctgtaatgga |
36423367 |
T |
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| Q |
220 |
cacaacctctctcttatccatatcaaccaacacagttaaaccttctatcggtttcatgtagaaattgacagtgcctttgct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36423366 |
cacaacctctctcttatccatatcaaccaacacagttaaaccttctatcggtttcatgtagaaattgacagtgcctttgct |
36423286 |
T |
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