View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_high_103 (Length: 249)

Name: NF3582_high_103
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_high_103
NF3582_high_103
[»] chr7 (23 HSPs)
chr7 (1-180)||(27612248-27612427)
chr7 (24-152)||(32177854-32177984)
chr7 (24-155)||(49113858-49113991)
chr7 (24-151)||(7417511-7417641)
chr7 (24-157)||(8437521-8437657)
chr7 (24-82)||(19305960-19306018)
chr7 (11-152)||(31894257-31894398)
chr7 (24-82)||(32523272-32523330)
chr7 (24-82)||(45746941-45746998)
chr7 (24-81)||(28408314-28408371)
chr7 (13-82)||(29226341-29226410)
chr7 (24-80)||(32832307-32832363)
chr7 (13-156)||(10878620-10878768)
chr7 (13-82)||(44307689-44307758)
chr7 (13-153)||(1511391-1511534)
chr7 (200-235)||(27612464-27612499)
chr7 (24-79)||(37453283-37453338)
chr7 (28-82)||(2933489-2933543)
chr7 (19-85)||(30060614-30060680)
chr7 (52-152)||(31894500-31894601)
chr7 (99-151)||(44307912-44307964)
chr7 (4-40)||(8869767-8869803)
chr7 (108-152)||(39026158-39026202)
[»] chr2 (25 HSPs)
chr2 (20-154)||(8322397-8322531)
chr2 (24-152)||(17846007-17846137)
chr2 (24-155)||(18916621-18916754)
chr2 (24-151)||(20364187-20364316)
chr2 (37-153)||(37084615-37084733)
chr2 (24-152)||(9320019-9320149)
chr2 (4-153)||(13862491-13862641)
chr2 (4-93)||(31769981-31770069)
chr2 (24-82)||(2318563-2318621)
chr2 (24-82)||(4261224-4261282)
chr2 (24-151)||(10044745-10044874)
chr2 (24-82)||(10108885-10108943)
chr2 (24-82)||(44536401-44536459)
chr2 (24-151)||(601327-601458)
chr2 (4-151)||(30337424-30337574)
chr2 (24-69)||(43520388-43520433)
chr2 (101-151)||(21984638-21984688)
chr2 (5-69)||(5547276-5547341)
chr2 (24-80)||(27360194-27360250)
chr2 (52-152)||(18916869-18916971)
chr2 (24-63)||(40044517-40044556)
chr2 (26-80)||(10520866-10520920)
chr2 (103-153)||(40710314-40710364)
chr2 (52-153)||(27360366-27360469)
chr2 (101-153)||(30337724-30337776)
[»] chr5 (26 HSPs)
chr5 (13-151)||(27843023-27843163)
chr5 (24-152)||(40833935-40834065)
chr5 (24-151)||(32936422-32936551)
chr5 (19-69)||(33568996-33569046)
chr5 (13-80)||(3294396-3294463)
chr5 (24-82)||(3539813-3539871)
chr5 (24-82)||(7145609-7145667)
chr5 (4-154)||(15178985-15179138)
chr5 (24-82)||(20769783-20769841)
chr5 (25-81)||(14274308-14274364)
chr5 (24-151)||(30370728-30370856)
chr5 (24-82)||(2094789-2094847)
chr5 (24-82)||(13600662-13600720)
chr5 (24-82)||(18485876-18485934)
chr5 (19-152)||(29171478-29171611)
chr5 (52-149)||(32994164-32994260)
chr5 (4-82)||(32994342-32994421)
chr5 (13-82)||(132253-132323)
chr5 (56-150)||(3294546-3294640)
chr5 (52-151)||(7145783-7145884)
chr5 (13-82)||(35362122-35362192)
chr5 (34-153)||(35363215-35363337)
chr5 (25-148)||(38981778-38981903)
chr5 (38-76)||(43166584-43166622)
chr5 (22-82)||(19558086-19558147)
chr5 (36-80)||(42858554-42858598)
[»] chr8 (27 HSPs)
chr8 (20-151)||(38464641-38464773)
chr8 (24-151)||(30904577-30904705)
chr8 (13-149)||(17844087-17844224)
chr8 (13-152)||(27523160-27523301)
chr8 (24-154)||(35482699-35482831)
chr8 (24-148)||(17875771-17875897)
chr8 (13-151)||(44379522-44379663)
chr8 (5-154)||(3691579-3691732)
chr8 (24-82)||(10682276-10682334)
chr8 (24-82)||(27912167-27912225)
chr8 (24-82)||(27958586-27958644)
chr8 (13-82)||(20223177-20223246)
chr8 (13-69)||(9734602-9734658)
chr8 (52-155)||(10682057-10682161)
chr8 (24-82)||(2967941-2968000)
chr8 (4-82)||(23792776-23792855)
chr8 (25-151)||(31231306-31231430)
chr8 (13-82)||(42123906-42123976)
chr8 (99-151)||(20223400-20223452)
chr8 (20-82)||(7899831-7899894)
chr8 (13-82)||(30928518-30928584)
chr8 (13-82)||(4128812-4128882)
chr8 (57-151)||(38464887-38464982)
chr8 (112-149)||(42641766-42641803)
chr8 (117-146)||(44605157-44605186)
chr8 (101-153)||(3691881-3691933)
chr8 (101-149)||(13795516-13795564)
[»] chr3 (24 HSPs)
chr3 (21-151)||(23043402-23043535)
chr3 (25-151)||(35850867-35850994)
chr3 (24-153)||(22316718-22316849)
chr3 (24-151)||(28829753-28829881)
chr3 (4-85)||(1341954-1342035)
chr3 (24-154)||(22975342-22975474)
chr3 (25-152)||(17574372-17574500)
chr3 (24-153)||(49620976-49621107)
chr3 (24-152)||(25847444-25847574)
chr3 (24-148)||(36229766-36229892)
chr3 (24-82)||(8852021-8852079)
chr3 (24-82)||(37513162-37513220)
chr3 (21-150)||(48434015-48434147)
chr3 (24-82)||(49984927-49984985)
chr3 (19-80)||(43006969-43007029)
chr3 (13-148)||(44506049-44506187)
chr3 (4-149)||(10687790-10687936)
chr3 (24-69)||(9296598-9296643)
chr3 (24-150)||(49711617-49711743)
chr3 (24-130)||(55009119-55009226)
chr3 (25-79)||(11121359-11121413)
chr3 (52-151)||(44506288-44506389)
chr3 (25-80)||(12012782-12012837)
chr3 (19-65)||(7603605-7603651)
[»] chr1 (24 HSPs)
chr1 (7-81)||(30306852-30306926)
chr1 (8-82)||(47193929-47194003)
chr1 (24-151)||(7114080-7114208)
chr1 (24-153)||(17611641-17611772)
chr1 (24-152)||(2026720-2026850)
chr1 (24-149)||(30002426-30002552)
chr1 (24-153)||(1549325-1549456)
chr1 (24-82)||(12139095-12139153)
chr1 (24-153)||(25780106-25780236)
chr1 (21-153)||(17985501-17985635)
chr1 (13-151)||(25267181-25267317)
chr1 (24-153)||(30562782-30562912)
chr1 (13-155)||(12114948-12115094)
chr1 (28-82)||(40902548-40902602)
chr1 (4-151)||(4969364-4969515)
chr1 (13-82)||(19897382-19897451)
chr1 (99-150)||(13763432-13763483)
chr1 (101-152)||(40290077-40290128)
chr1 (13-62)||(9172243-9172291)
chr1 (108-149)||(9172861-9172902)
chr1 (13-62)||(9180225-9180273)
chr1 (108-149)||(9180843-9180884)
chr1 (7-80)||(44066925-44066997)
chr1 (101-153)||(12115247-12115299)
[»] chr6 (11 HSPs)
chr6 (24-150)||(33595320-33595448)
chr6 (24-153)||(4242921-4243052)
chr6 (24-155)||(3218358-3218490)
chr6 (13-80)||(10810181-10810248)
chr6 (24-151)||(3922755-3922884)
chr6 (24-82)||(6754988-6755046)
chr6 (24-82)||(23068914-23068971)
chr6 (24-79)||(14763392-14763447)
chr6 (24-83)||(20491709-20491767)
chr6 (101-149)||(12473169-12473217)
chr6 (101-149)||(20491530-20491578)
[»] chr4 (37 HSPs)
chr4 (24-154)||(23163496-23163628)
chr4 (24-152)||(48419433-48419563)
chr4 (21-151)||(55140198-55140329)
chr4 (24-151)||(33692262-33692391)
chr4 (24-151)||(37872767-37872898)
chr4 (24-128)||(5260217-5260322)
chr4 (24-149)||(50161333-50161460)
chr4 (4-82)||(26202593-26202672)
chr4 (24-152)||(49621438-49621568)
chr4 (28-149)||(3546490-3546614)
chr4 (24-82)||(9526025-9526083)
chr4 (24-82)||(13294674-13294732)
chr4 (24-82)||(28458738-28458796)
chr4 (24-82)||(52690312-52690370)
chr4 (13-151)||(2685985-2686120)
chr4 (24-82)||(20931193-20931251)
chr4 (24-82)||(21053512-21053570)
chr4 (19-153)||(22335434-22335567)
chr4 (24-79)||(23549714-23549769)
chr4 (24-82)||(33369582-33369641)
chr4 (15-85)||(563700-563768)
chr4 (103-153)||(2686282-2686332)
chr4 (24-82)||(21707819-21707877)
chr4 (32-82)||(41689462-41689512)
chr4 (24-82)||(42857018-42857076)
chr4 (25-85)||(3818207-3818265)
chr4 (15-79)||(50977658-50977723)
chr4 (15-150)||(53232306-53232444)
chr4 (25-80)||(3810637-3810690)
chr4 (24-153)||(46143487-46143618)
chr4 (52-157)||(55742852-55742959)
chr4 (20-82)||(30055281-30055344)
chr4 (52-153)||(42856802-42856904)
chr4 (43-81)||(43914639-43914676)
chr4 (99-148)||(12825008-12825057)
chr4 (19-152)||(25297679-25297817)
chr4 (101-153)||(30055499-30055551)
[»] scaffold1577 (1 HSPs)
scaffold1577 (19-153)||(1083-1219)
[»] scaffold0029 (2 HSPs)
scaffold0029 (24-153)||(137132-137261)
scaffold0029 (52-153)||(136914-137017)
[»] scaffold0002 (2 HSPs)
scaffold0002 (24-153)||(330413-330542)
scaffold0002 (52-153)||(330195-330298)
[»] scaffold0347 (2 HSPs)
scaffold0347 (52-151)||(11940-12039)
scaffold0347 (4-69)||(12133-12199)
[»] scaffold0311 (2 HSPs)
scaffold0311 (4-82)||(12668-12747)
scaffold0311 (101-153)||(12892-12944)
[»] scaffold0053 (1 HSPs)
scaffold0053 (25-69)||(15254-15298)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 27612248 - 27612427
Alignment:
Q  1 actaagaaacttaaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaactaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27612248 actaagaaacttaaattccattgaaaaaatctcattaaaaatgataagatattgtcattttataacatataagactaaatcggaatcaaaaaactaatga 27612347  T
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcctattatcaatgttttgggcttaatgtgtg 180  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27612348 acgaaaatgttacctgaaattaagttaaaggatgaattatgtaattttgcctattatcaatgttttgggcttaatgtgtg 27612427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 32177984 - 32177854
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||||||||| || ||||     
T  32177984 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaaatgttacctaaaata 32177885  T
Q  122 aagttaaaggatgaattatgtaattttgcct 152  Q
    |||||||||||  |||| |||||||||||||    
T  32177884 aagttaaaggactaattgtgtaattttgcct 32177854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 49113991 - 49113858
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||  |  ||||||   ||| | |||||| ||||| || ||||     
T  49113991 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtaacaaaaaaaagataaaggacgaaagtgttacctaaaata 49113892  T
Q  122 aagttaaaggatgaattatgtaattttgcctatt 155  Q
    |||||||||||  |||| ||||||||||||||||    
T  49113891 aagttaaaggactaattgtgtaattttgcctatt 49113858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 7417641 - 7417511
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa---ctaatgaacgaaaatgttatctgaaat 120  Q
    ||||||||||||  ||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||    ||| | |||||||||||| || ||||    
T  7417641 aaaaaatctcatacaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaaagataaaggacgaaaatgttacctaaaat 7417542  T
Q  121 taagttaaaggatgaattatgtaattttgcc 151  Q
     ||||||| |||| |||| ||||||||||||    
T  7417541 aaagttaagggattaattgtgtaattttgcc 7417511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 157
Target Start/End: Original strand, 8437521 - 8437657
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa---ctaatgaacgaaaatgttatctgaaat 120  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||| | |||||||||| ||  ||||||    ||| | |||||| ||||| || ||||    
T  8437521 aaaaaatctcataaaaaatgataagatattggcattttataacataaaggactaaatcgtgacaaaaaaaaagataaaggacgaaagtgttacctaaaat 8437620  T
Q  121 taagttaaaggatgaattatgtaattttgcctattat 157  Q
     ||||||| |||  |||||||||||||||||| ||||    
T  8437621 aaagttaagggactaattatgtaattttgccttttat 8437657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 19305960 - 19306018
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  19305960 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 19306018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 31894398 - 31894257
Alignment:
Q  11 ttaaattccattgaaaaaatctcattaaaaatt-ataagatattgtcattttataacatataagactaaatcgggatcaaaaaactaatgaacgaaaatg 109  Q
    ||||||| |||||||||| |||||||||||| | |||| ||| ||||||||||||||||| | ||||||||||  |  |||||| ||| | |||||| ||    
T  31894398 ttaaatttcattgaaaaa-tctcattaaaaaatgataaaatagtgtcattttataacataaaggactaaatcgttacaaaaaaaataaaggacgaaagtg 31894300  T
Q  110 ttatctgaaattaagttaaaggatgaattatgtaattttgcct 152  Q
    ||| || |||||||||||| |||  | || |||||||||||||    
T  31894299 ttacctaaaattaagttaagggactatttgtgtaattttgcct 31894257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 32523330 - 32523272
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  32523330 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 32523272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 45746941 - 45746998
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  45746941 aaaaaatctcataaaaaatgataagatattgtcattttataacata-aagactaaatcg 45746998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 28408371 - 28408314
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatc 81  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||    
T  28408371 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatc 28408314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 29226410 - 29226341
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| ||||||||||| ||||| |||||| |||||||||| ||||||||||||||| | ||||||||||    
T  29226410 aaatttcattgaaaaaaactcataaaaaatgataagatattatcattttataacataaaggactaaatcg 29226341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 32832363 - 32832307
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||    
T  32832363 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaat 32832307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 10878768 - 10878620
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaatt-ataagatattgtcattttataacatataagactaaatcgggatcaaaaaa----ctaatgaacgaaaa 107  Q
    ||||| ||||||||||||||||| ||||| | |||| ||| ||||||||||||||||| | ||||||||||  |  ||||||     ||| | ||||||     
T  10878768 aaatttcattgaaaaaatctcataaaaaaatgataaaatagtgtcattttataacataaaggactaaatcgttacaaaaaaaaaagataaaggacgaaag 10878669  T
Q  108 tgttatctgaaattaagttaaaggatgaattatgtaattttgcctatta 156  Q
    ||||| || |||||||||||| |||  |||| |||||||||||||||||    
T  10878668 tgttacctaaaattaagttaagggactaattgtgtaattttgcctatta 10878620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 44307758 - 44307689
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| ||||||||||||||||| |||||| |||| ||| ||||||||||||| ||| | ||||||||||    
T  44307758 aaatttcattgaaaaaatctcataaaaaatgataaaatagtgtcattttataatataaaggactaaatcg 44307689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 1511391 - 1511534
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaa--ttataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatg 109  Q
    ||||| ||||||||||||||||| |||||  | |||| ||| ||||||||||||||||| | ||||||||||  |  ||||||  ||| | |||||| ||    
T  1511391 aaatttcattgaaaaaatctcataaaaaaaatgataaaatagtgtcattttataacataaaggactaaatcgttacaaaaaaagataaaggacgaaagtg 1511490  T
Q  110 ttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    ||| || || ||||||||| |||  |||| ||||||||||||||    
T  1511491 ttacctaaatttaagttaagggactaattgtgtaattttgccta 1511534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 27612464 - 27612499
Alignment:
Q  200 cacactaaaccatacggtgaatccgccccttcgtgt 235  Q
    ||||||||||||||||||||||||||||||||||||    
T  27612464 cacactaaaccatacggtgaatccgccccttcgtgt 27612499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 37453283 - 37453338
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaa 79  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||| | |||||||    
T  37453283 aaaaaatttcataaaaaatgataagatattgtcattttataacataaaggactaaa 37453338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 2933489 - 2933543
Alignment:
Q  28 aatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||| |||||| |||||||||| ||||||||||||||| | ||||||||||    
T  2933489 aatctcataaaaaatgataagatattttcattttataacataaaggactaaatcg 2933543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 30060614 - 30060680
Alignment:
Q  19 cattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga 85  Q
    ||||||||||||||| | |||||| |||| |||||||||||| |||||||| | |||||||| ||||    
T  30060614 cattgaaaaaatctcttaaaaaatgataaaatattgtcatttcataacataaaggactaaattggga 30060680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 31894500 - 31894601
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaac-taatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgc 150  Q
    |||| ||||||||||||| | ||||||||||  |  ||||||  ||| | ||||||||||||||| |||||||||||| |||  |||| |||||||||||    
T  31894500 ttgttattttataacataaaggactaaatcgttacaaaaaaaaataaaggacgaaaatgttatctaaaattaagttaagggactaattgtgtaattttgc 31894599  T
Q  151 ct 152  Q
    ||    
T  31894600 ct 31894601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 44307912 - 44307964
Alignment:
Q  99 gaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    |||||||||||||| || |||||||||||| |||| |||| ||||||||||||    
T  44307912 gaacgaaaatgttacctaaaattaagttaagggattaattgtgtaattttgcc 44307964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 8869767 - 8869803
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcattaaaa 40  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  8869767 aagaaactcaaatttcattgaaaaaatctcattaaaa 8869803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 39026158 - 39026202
Alignment:
Q  108 tgttatctgaaattaagttaaaggatgaattatgtaattttgcct 152  Q
    |||||| |||||||||||||| |||  ||||||||||||||||||    
T  39026158 tgttatttgaaattaagttaatggaaaaattatgtaattttgcct 39026202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 8322397 - 8322531
Alignment:
Q  20 attgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaactaatgaacgaaaatgttatctgaaa 119  Q
    ||||||| ||||| || |||||| |||||||||||||||||||||||||| | |||||||||| ||  |||||  ||| | |||||||||||| || |||    
T  8322397 attgaaataatctaataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgaaaaaaaagataaaggacgaaaatgttacctaaaa 8322496  T
Q  120 ttaagttaaaggatgaattatgtaattttgcctat 154  Q
    ||||||||| ||| ||||| |||||||||||||||    
T  8322497 ttaagttaagggacgaattctgtaattttgcctat 8322531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 17846137 - 17846007
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||||||||| || ||||     
T  17846137 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaaatgttacctaaaata 17846038  T
Q  122 aagttaaaggatgaattatgtaattttgcct 152  Q
    ||||||| |||  |||| |||||||||||||    
T  17846037 aagttaagggactaattgtgtaattttgcct 17846007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 18916754 - 18916621
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  18916754 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 18916655  T
Q  122 aagttaaaggatgaattatgtaattttgcctatt 155  Q
    ||||||| |||  |||| ||||||||||||||||    
T  18916654 aagttaagggactaattgtgtaattttgcctatt 18916621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 20364187 - 20364316
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggg--atcaaaaaactaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| |  |  |||||| ||| | |||||| ||||| || ||||     
T  20364187 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaaaataaaggacgaaagtgttacctaaaata 20364286  T
Q  122 aagttaaaggatgaattatgtaattttgcc 151  Q
    |||||||||||  |||| ||||||||||||    
T  20364287 aagttaaaggactaattgtgtaattttgcc 20364316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 37084733 - 37084615
Alignment:
Q  37 aaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaacta-atga-acgaaaatgttatctgaaattaagttaaaggatg 134  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||||  |||| | || || | ||||||| |||| |||||||||||||||| ||      
T  37084733 aaaaatgataagatattgtcattttataacataaatgactaaatcgggacaaaaagaatatataagacgaaaacgttacctgaaattaagttaaatgaca 37084634  T
Q  135 aattatgtaattttgccta 153  Q
    |||||||||||||||||||    
T  37084633 aattatgtaattttgccta 37084615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 9320019 - 9320149
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  9320019 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 9320118  T
Q  122 aagttaaaggatgaattatgtaattttgcct 152  Q
    ||||||| |||  |||| |||||||||||||    
T  9320119 aagttaagggactaattgtgtaattttgcct 9320149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 13862641 - 13862491
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaac 102  Q
    |||||||| | ||| ||| |||||||||||||||||||| | || ||||||||||||||||||||| | |||||| ||| ||  ||||||  ||| | ||    
T  13862641 aagaaactcatatttcatagaaaaaatctcattaaaaatgaaaaaatattgtcattttataacataaaggactaattcgagacaaaaaaagataaaggac 13862542  T
Q  103 gaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    |||| | |||  | |||||||||||||||| ||||| ||||||||| ||||    
T  13862541 gaaagtattacttaaaattaagttaaaggacgaattgtgtaattttaccta 13862491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 31769981 - 31770069
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa 93  Q
    |||||||| ||||| |||||||||| ||||||||||||| |||| |||||||||||||| |||||| | |||||||| ||| ||||||||    
T  31769981 aagaaactcaaatttcattgaaaaagtctcattaaaaatgataaaatattgtcattttaaaacatagaggactaaattggg-tcaaaaaa 31770069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 2318621 - 2318563
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  2318621 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 2318563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 4261282 - 4261224
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  4261282 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 4261224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 10044874 - 10044745
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||| | ||  ||||||   ||| | |||||| ||||| || ||||     
T  10044874 aaaaaatctcataaaaaatgataagatattgtcattttataacataaatgactaaattgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 10044775  T
Q  122 aagttaaaggatgaattatgtaattttgcc 151  Q
    ||||||| |||  |||| ||||||||||||    
T  10044774 aagttaagggactaattgtgtaattttgcc 10044745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 10108943 - 10108885
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  10108943 aaaaaatctcataaaaaatgataagatattgtcattttataacataaatgactaaatcg 10108885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 44536401 - 44536459
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  44536401 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 44536459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 601458 - 601327
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa---ctaatgaacgaaaatgttatctgaaat 120  Q
    |||||||||||| |||||| |||||||||||||||||||||  ||| |||||||||||| ||  ||||||    ||| | |||||| ||||| || ||||    
T  601458 aaaaaatctcataaaaaatgataagatattgtcattttatattataaaagactaaatcgtgacaaaaaaaaagataaaggacgaaagtgttacctaaaat 601359  T
Q  121 taagttaaag-gatgaattatgtaattttgcc 151  Q
     ||||||||| ||| |||| ||||||||||||    
T  601358 aaagttaaagagattaattgtgtaattttgcc 601327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 30337574 - 30337424
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatga 100  Q
    |||||| | ||||| |||||||||| ||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||  |  ||||||   ||| |     
T  30337574 aagaaaatcaaatttcattgaaaaattctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcgttacaaaaaaaagataaagg 30337475  T
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    |||||||||||| || |||||||||||| |||  |||| ||||||||||||    
T  30337474 acgaaaatgttacctaaaattaagttaatggactaattgtgtaattttgcc 30337424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 43520388 - 43520433
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacata 69  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||    
T  43520388 aaaaaatctcattaaaattgataagatattgtcattttataacata 43520433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 21984688 - 21984638
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    |||||||||||| ||||||||||| ||||| | ||||||||||||||||||    
T  21984688 acgaaaatgttacctgaaattaaggtaaagaacgaattatgtaattttgcc 21984638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 5547276 - 5547341
Alignment:
Q  5 agaaacttaaattccattgaaaaaatctcat-taaaaattataagatattgtcattttataacata 69  Q
    ||||| ||||||| |||||||||||||||||  |||||| |||| ||| |||||||||||||||||    
T  5547276 agaaaattaaatttcattgaaaaaatctcataaaaaaatgataaaataatgtcattttataacata 5547341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 27360250 - 27360194
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    |||||||||| | |||||| ||||||||||||||||| |||||||| | ||||||||    
T  27360250 aaaaaatctcttaaaaaatgataagatattgtcatttaataacataaaggactaaat 27360194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 18916869 - 18916971
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaac--taatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||||||||||| | |||||||||| ||  ||||||   ||| |||||||| ||||| || |||| ||||||| |||  |||||||||||||||    
T  18916869 ttgttattttataacataaaggactaaatcgtgacaaaaaaaagataaagaacgaaagtgttacctaaaataaagttaagggactaattatgtaattttg 18916968  T
Q  150 cct 152  Q
    |||    
T  18916969 cct 18916971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 40044517 - 40044556
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttat 63  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  40044517 aaaaaatctcataaaaaataataagatattgtcattttat 40044556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 10520920 - 10520866
Alignment:
Q  26 aaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    |||||||||||  |||| |||||||||||||||||||||| ||| | ||||||||    
T  10520920 aaaatctcattgcaaatgataagatattgtcattttataatataaaggactaaat 10520866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 40710364 - 40710314
Alignment:
Q  103 gaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    |||||| ||| ||||||||||||||| ||| ||||| ||||||||||||||    
T  40710364 gaaaatattacctgaaattaagttaagggacgaattgtgtaattttgccta 40710314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 27360366 - 27360469
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaac--taatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||||||||||| | |||||||||| ||  ||||||   ||| | |||||||||||| || |||| ||||||| |||  |||| ||||||||||    
T  27360366 ttgttattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaaatgttacctaaaataaagttaagggactaattgtgtaattttg 27360465  T
Q  150 ccta 153  Q
    ||||    
T  27360466 ccta 27360469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 30337724 - 30337776
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    |||| |||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  30337724 acgataatgttatctaaaattaagttaagggactaattctgtaattttgccta 30337776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 27843163 - 27843023
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgt 110  Q
    ||||| ||||| ||||||||||| |||||| |||| ||||||||||||||||||||| ||||||||||||  |  ||||||   ||| | ||||||||||    
T  27843163 aaatttcattggaaaaatctcataaaaaatgataaaatattgtcattttataacataaaagactaaatcgttacaaaaaaaagataaaggacgaaaatgt 27843064  T
Q  111 tatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    || || |||||||||||| |||  |||||||||||||||||    
T  27843063 tacctaaaattaagttaagggactaattatgtaattttgcc 27843023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 40834065 - 40833935
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  40834065 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 40833966  T
Q  122 aagttaaaggatgaattatgtaattttgcct 152  Q
    ||||||| |||  |||| |||||||||||||    
T  40833965 aagttaagggactaattgtgtaattttgcct 40833935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 32936422 - 32936551
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  32936422 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 32936521  T
Q  122 aagttaaaggatgaattatgtaattttgcc 151  Q
    ||||||| |||  |||| ||||||||||||    
T  32936522 aagttaagggactaattgtgtaattttgcc 32936551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 33569046 - 33568996
Alignment:
Q  19 cattgaaaaaatctcattaaaaattataagatattgtcattttataacata 69  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33569046 cattgaaaaaatctcattaaaaatgataagatattgtcattttataacata 33568996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 3294463 - 3294396
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    ||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||| | ||||||||    
T  3294463 aaattccattgaaaaaatcacataaaaaataataagatattatcattttataacataaaggactaaat 3294396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 3539813 - 3539871
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  3539813 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 3539871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 7145667 - 7145609
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  7145667 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 7145609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 15178985 - 15179138
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatga 100  Q
    |||||| | ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||  |  ||||||   ||| |     
T  15178985 aagaaaatcaaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcgttaaaaaaaaaagataaagg 15179084  T
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcctat 154  Q
    |||||| ||||| || |||||||||||| |||  |||| |||||||||||||||    
T  15179085 acgaaagtgttacctaaaattaagttaagggactaattgtgtaattttgcctat 15179138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 20769841 - 20769783
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  20769841 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 20769783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 14274364 - 14274308
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatc 81  Q
    ||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||    
T  14274364 aaaaatctcataaaaaataataagatattgtcattttataacataaaggactaaatc 14274308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 30370728 - 30370856
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaatta 122  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||  ||| | |||||| ||||  || |||| |    
T  30370728 aaaaaatttcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaagataaaggacgaaagtgttgcctaaaataa 30370827  T
Q  123 agttaaaggatgaattatgtaattttgcc 151  Q
    |||||| |||  |||| ||||||||||||    
T  30370828 agttaagggactaattgtgtaattttgcc 30370856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 2094789 - 2094847
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||| | ||||||||||    
T  2094789 aaaaaatctcataaaaaatgataagatattgtcattttataatataaaggactaaatcg 2094847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 13600662 - 13600720
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||| | ||||||||||    
T  13600662 aaaaaatctcataaaaaatgataagatattatcattttataacataaaggactaaatcg 13600720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 18485876 - 18485934
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||| | ||||||||||    
T  18485876 aaaaaatctcataaaaaatgataagatattgtcattttataagataaaggactaaatcg 18485934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 29171478 - 29171611
Alignment:
Q  19 cattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctga 117  Q
    ||||||||||||||||  ||||||  ||| ||||||||||||||||||||| |||| ||||| ||||  ||||||  | | | |||||| |||||  |||    
T  29171478 cattgaaaaaatctcaa-aaaaatgttaaaatattgtcattttataacataaaagaataaattgggacaaaaaaagatgaaggacgaaagtgttacgtga 29171576  T
Q  118 aattaagttaaaggatgaattatgtaattttgcct 152  Q
    |||||||||||  ||| |||| |||||||||||||    
T  29171577 aattaagttaagagataaattgtgtaattttgcct 29171611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 32994260 - 32994164
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaactaatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||||||||||| ||||||||||||  | ||||||| ||| | ||||||||||||| | ||||||||||||| ||  |||| ||||||||||    
T  32994260 ttgttattttataacataaaagactaaatcgtta-caaaaaaataaaggacgaaaatgttatttaaaattaagttaaacgactaattgtgtaattttg 32994164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 32994342 - 32994421
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||| | ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  32994342 aagaaaatcaaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcg 32994421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 132253 - 132323
Alignment:
Q  13 aaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  132253 aaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcg 132323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 3294546 - 3294640
Alignment:
Q  56 cattttataacatataagactaaatcgggatcaaaaaactaatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgc 150  Q
    ||||||||||||||||||||||| ||| ||  |||||| ||| | || ||| |||||  | |||||||||||| |||| |||| |||||||||||    
T  3294546 cattttataacatataagactaagtcgagacaaaaaaaataaaggacaaaagtgttacttaaaattaagttaagggataaattttgtaattttgc 3294640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 7145783 - 7145884
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaac--taatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||||||||||| | |||||||||| ||  ||||||   ||| | |||||||||||| || |||| ||||||| |||| |||||||||||||||    
T  7145783 ttgttattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaaatgttacctaaaataaagttaagggattaattatgtaattttg 7145882  T
Q  150 cc 151  Q
    ||    
T  7145883 cc 7145884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 35362122 - 35362192
Alignment:
Q  13 aaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  35362122 aaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcg 35362192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 35363215 - 35363337
Alignment:
Q  34 attaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa----ctaatgaacgaaaatgttatctgaaattaagttaaa 129  Q
    ||||||| | |||||||||||||||||||||||||| | |||||||||| || |||||||     ||| | |||||| ||||| || |||| |||||||     
T  35363215 attaaaactgataagatattgtcattttataacataaaggactaaatcgtga-caaaaaagaagataaaggacgaaagtgttacctaaaataaagttaag 35363313  T
Q  130 ggatgaattatgtaattttgccta 153  Q
    |||  |||| ||||||||||||||    
T  35363314 ggactaattgtgtaattttgccta 35363337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 148
Target Start/End: Original strand, 38981778 - 38981903
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatta 122  Q
    ||||||||||| |||| | ||||| | ||||||||||||||||||   |||||||||| ||| ||||||   | | | |||||| ||||| || ||||||    
T  38981778 aaaaatctcataaaaattgataaggtgttgtcattttataacataagggactaaatcgagatgaaaaaaagatgaaggacgaaagtgttacctaaaatta 38981877  T
Q  123 agttaaaggatgaattatgtaatttt 148  Q
    | ||||  |||||| |||||||||||    
T  38981878 aattaagagatgaactatgtaatttt 38981903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 43166584 - 43166622
Alignment:
Q  38 aaaattataagatattgtcattttataacatataagact 76  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  43166584 aaaattataagatattgacattttataacataaaagact 43166622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 19558086 - 19558147
Alignment:
Q  22 tgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  19558086 tgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcg 19558147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 42858554 - 42858598
Alignment:
Q  36 taaaaattataagatattgtcattttataacatataagactaaat 80  Q
    ||||||| ||||||||||| |||||||||||||| | ||||||||    
T  42858554 taaaaatgataagatattgacattttataacataaaggactaaat 42858598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 38464773 - 38464641
Alignment:
Q  20 attgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaa 118  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||||||  ||||||  ||| | || ||| ||||| |||||    
T  38464773 attgaaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgggacaaaaaaagataaaggacaaaagtgttacctgaa 38464674  T
Q  119 attaagttaaaggatgaattatgtaattttgcc 151  Q
     ||||||||| ||| || || ||||||||||||    
T  38464673 tttaagttaagggacgagttgtgtaattttgcc 38464641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 30904577 - 30904705
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||  ||| | |||||| ||||| || |||| |    
T  30904577 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaagataaaggacgaaagtgttacctaaaataa 30904676  T
Q  123 agttaaaggatgaattatgtaattttgcc 151  Q
    |||||| |||  |||| ||||||||||||    
T  30904677 agttaagggactaattgtgtaattttgcc 30904705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 17844087 - 17844224
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaa--aactaatgaacgaaaatgt 110  Q
    ||||| ||||||||||||||||| | |||| |||| ||||||||||||||||||||| |||||||||||| ||  ||||  || ||| | |||||| |||    
T  17844087 aaatttcattgaaaaaatctcataagaaatgataaaatattgtcattttataacata-aagactaaatcgtgacaaaaaataaataaaggacgaaagtgt 17844185  T
Q  111 tatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    || || |||||||||||| |||  |||| ||||||||||    
T  17844186 tacctaaaattaagttaagggactaattgtgtaattttg 17844224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 27523160 - 27523301
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggg--atcaaaaaactaatgaacgaaaatgt 110  Q
    ||||| |||||||||| ||||   |||| | |||||||||||||||||||||||||| | ||||||||||||  |  |||||  ||| | | |||| |||    
T  27523160 aaatttcattgaaaaactctcggaaaaattgataagatattgtcattttataacataaaggactaaatcgggacaagaaaaatataaaggatgaaagtgt 27523259  T
Q  111 tatctgaaattaagttaaaggatgaattatgtaattttgcct 152  Q
    || || |||||||||||||||| ||||| |||||||||||||    
T  27523260 taactaaaattaagttaaaggacgaattgtgtaattttgcct 27523301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 35482831 - 35482699
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  35482831 aaaacatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 35482732  T
Q  122 aagttaaaggatgaattatgtaattttgcctat 154  Q
    ||||||| |||  |||| |||||||||||||||    
T  35482731 aagttaagggactaattgtgtaattttgcctat 35482699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 17875897 - 17875771
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  17875897 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 17875798  T
Q  122 aagttaaaggatgaattatgtaatttt 148  Q
    ||||||| |||  |||| |||||||||    
T  17875797 aagttaagggactaattgtgtaatttt 17875771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 44379663 - 44379522
Alignment:
Q  13 aaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatg 109  Q
    ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||  |  ||||||   ||| | |||||| ||    
T  44379663 aaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcgttacaaaaaaaagataaaggacgaaagtg 44379564  T
Q  110 ttatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    ||| || |||||||||||| |||| |||| ||||||||||||    
T  44379563 ttacctaaaattaagttaagggattaattgtgtaattttgcc 44379522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 3691732 - 3691579
Alignment:
Q  5 agaaacttaaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa---ctaatga 100  Q
    ||||| ||||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||  |  ||||||    ||| |     
T  3691732 agaaaattaaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcgttacaaaaaaaaagataaagg 3691633  T
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcctat 154  Q
    |||||| ||||| || |||||| ||||| |||  |||| |||||||||||||||    
T  3691632 acgaaagtgttacctaaaattatgttaagggactaattgtgtaattttgcctat 3691579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 10682276 - 10682334
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||  |||||| |||||||||||||||||||||||||| | ||||||||||    
T  10682276 aaaaaatctcacaaaaaatgataagatattgtcattttataacataaaggactaaatcg 10682334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 27912225 - 27912167
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||| | ||||||||||    
T  27912225 aaaaaatctcataaaaaatgataagatattgtaattttataacataaaggactaaatcg 27912167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 27958644 - 27958586
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||| | ||||||||||    
T  27958644 aaaaaatctcataaaaaatgataagatattgtaattttataacataaaggactaaatcg 27958586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 20223246 - 20223177
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| ||||||||||||||||| |||||| |||| ||| ||||||||||||| ||| | ||||||||||    
T  20223246 aaatttcattgaaaaaatctcataaaaaatgataaaatagtgtcattttataatataaaggactaaatcg 20223177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 9734658 - 9734602
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacata 69  Q
    ||||| ||||||||||||||||| |||| ||| || |||||||||||||||||||||    
T  9734658 aaatttcattgaaaaaatctcataaaaagttaaaaaatattgtcattttataacata 9734602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 10682161 - 10682057
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaac-taatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgc 150  Q
    |||| ||||||||||||| | |||||||||| ||  ||||||  ||| |||||||| ||||| || |||| ||||||| |||| |||| |||||||||||    
T  10682161 ttgttattttataacataaaggactaaatcgtgactaaaaaagataaagaacgaaagtgttacctaaaataaagttaagggattaattgtgtaattttgc 10682062  T
Q  151 ctatt 155  Q
    |||||    
T  10682061 ctatt 10682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 2968000 - 2967941
Alignment:
Q  24 aaaaaatctcattaaaaatt-ataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| | ||||||||||    
T  2968000 aaaaaatctcataaaaaaatgataagatattgtcattttataacataaaggactaaatcg 2967941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 23792776 - 23792855
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||| | ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  23792776 aagaaaatcaaatttcattgaaaaaatctcatacaaaaatgataaaataatgtcattttataacataaaggactaaatcg 23792855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 31231306 - 31231430
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaactaatgaacgaaaatgttatctgaaattaag 124  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||| | |||||||| || |  |||||   |||| || |||||||||||| |||||||     
T  31231306 aaaaatctcat-aaaaatgataagatattgttattttataacataaaggactaaattggcaaaaaaaataaaatg-actaaaatgttatctaaaattaaa 31231403  T
Q  125 ttaaaggatgaattatgtaattttgcc 151  Q
    |||| ||| ||||  | ||||||||||    
T  31231404 ttaatggacgaatggtataattttgcc 31231430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 42123906 - 42123976
Alignment:
Q  13 aaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  42123906 aaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcg 42123976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 20223400 - 20223452
Alignment:
Q  99 gaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    |||||||||||||| || |||||||||||| |||| |||| ||||||||||||    
T  20223400 gaacgaaaatgttacctaaaattaagttaagggattaattgtgtaattttgcc 20223452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 7899894 - 7899831
Alignment:
Q  20 attgaaaaaatctcattaaaaatt-ataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||||||| ||||| | |||| ||| ||||||||||||||||| | ||||||||||    
T  7899894 attgaaaaaatctcataaaaaaatgataaaatagtgtcattttataacataaaggactaaatcg 7899831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 30928518 - 30928584
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| |||||||||||||||||   |||| |||| ||| ||||||||||||||||| | ||||||||||    
T  30928518 aaatttcattgaaaaaatctcat---aaatgataaaatagtgtcattttataacataaaggactaaatcg 30928584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 4128882 - 4128812
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaatt-ataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| ||||||||||||||||| ||||| | |||| ||| | ||||||||||||||| | ||||||||||    
T  4128882 aaatttcattgaaaaaatctcataaaaaaatgataaaatagtttcattttataacataaaggactaaatcg 4128812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 38464887 - 38464982
Alignment:
Q  57 attttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    ||||||||||||| |||||||||||||||  ||||||   ||| | |||||| ||||| || |||| ||| ||| ||||||||| ||||||||||||    
T  38464887 attttataacataaaagactaaatcgggacaaaaaaaagataaaggacgaaagtgttacctaaaataaag-taagggatgaattgtgtaattttgcc 38464982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 42641803 - 42641766
Alignment:
Q  112 atctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  42641803 atctaaaattaagttaaaggatgaattatgcaattttg 42641766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 44605186 - 44605157
Alignment:
Q  117 aaattaagttaaaggatgaattatgtaatt 146  Q
    ||||||||||||||||||||||||||||||    
T  44605186 aaattaagttaaaggatgaattatgtaatt 44605157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 3691881 - 3691933
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    |||||||||||| || ||||||||| || |||| |||| ||||||||||||||    
T  3691881 acgaaaatgttacctaaaattaagtgaagggattaattgtgtaattttgccta 3691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 13795564 - 13795516
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||||||||||| || |||||||||||| ||| ||||| ||||||||||    
T  13795564 acgaaaatgttagctaaaattaagttaagggacgaattgtgtaattttg 13795516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 23043402 - 23043535
Alignment:
Q  21 ttgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaa---aactaatgaacgaaaatgttatctga 117  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||   || ||| | |||||||||||| || |    
T  23043402 ttgaaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaataaataaaggacgaaaatgttacctaa 23043501  T
Q  118 aattaagttaaaggatgaattatgtaattttgcc 151  Q
    ||| |||||||||||  |||| ||||||||||||    
T  23043502 aataaagttaaaggactaattgtgtaattttgcc 23043535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 35850867 - 35850994
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaattaa 123  Q
    ||||||||||| |||| | ||||| |||||||||||||||||||| |||||||||||||||  ||||||  | | |||||||| ||||| || |||||||    
T  35850867 aaaaatctcataaaaagtgataaggtattgtcattttataacataaaagactaaatcgggacaaaaaaagatgaagaacgaaagtgttacctaaaattaa 35850966  T
Q  124 gttaaaggatgaattatgtaattttgcc 151  Q
     ||||| || ||||||||||||||||||    
T  35850967 attaaaagacgaattatgtaattttgcc 35850994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 22316849 - 22316718
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  22316849 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 22316750  T
Q  122 aagttaaaggatgaattatgtaattttgccta 153  Q
    ||||||| |||  |||| ||||||||||||||    
T  22316749 aagttaagggactaattgtgtaattttgccta 22316718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 28829881 - 28829753
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||  ||| | |||||| ||||| || |||| |    
T  28829881 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaagataaaggacgaaagtgttacctaaaataa 28829782  T
Q  123 agttaaaggatgaattatgtaattttgcc 151  Q
    |||||||| |  |||| ||||||||||||    
T  28829781 agttaaagaactaattgtgtaattttgcc 28829753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 1342035 - 1341954
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga 85  Q
    |||||||| ||||| |||||||||| ||| ||||||||| ||||||||||||||||||| |||||| | || ||||||||||    
T  1342035 aagaaactcaaatttcattgaaaaagtctaattaaaaatgataagatattgtcattttaaaacataaaggaataaatcggga 1341954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 22975474 - 22975342
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   |||   || ||||||||| || ||||     
T  22975474 aaaaaatctcataaaaaataataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaatgacaaaaatgttacctaaaata 22975375  T
Q  122 aagttaaaggatgaattatgtaattttgcctat 154  Q
    ||||||| |||  |||| |||||||||||||||    
T  22975374 aagttaagggactaattgtgtaattttgcctat 22975342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 17574500 - 17574372
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga-tcaaaaaactaatgaacgaaaatgttatctgaaattaa 123  Q
    ||||||||||| |||||| |||| ||||||| ||||||||||||| | ||||||||||  |   |||||| ||| | |||||| ||||| || |||||||    
T  17574500 aaaaatctcataaaaaatgataaaatattgtaattttataacataaaggactaaatcgtaacaaaaaaaaataaaggacgaaagtgttacctaaaattaa 17574401  T
Q  124 gttaaaggatgaattatgtaattttgcct 152  Q
    ||||| ||| ||||| |||||||||||||    
T  17574400 gttaatggacgaattgtgtaattttgcct 17574372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 49621107 - 49620976
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| || ||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  49621107 aaaaaatctcataaaaaatgatgagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 49621008  T
Q  122 aagttaaaggatgaattatgtaattttgccta 153  Q
    |||||| ||||| |||  ||||||||||||||    
T  49621007 aagttagaggattaatcgtgtaattttgccta 49620976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 25847574 - 25847444
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| |||||||| ||||| || ||||     
T  25847574 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaagaacgaaagtgttacctaaaata 25847475  T
Q  122 aagttaaaggatgaattatgtaattttgcct 152  Q
    || |||| |||  |||| | |||||||||||    
T  25847474 aaattaagggactaattgtataattttgcct 25847444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 36229892 - 36229766
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  36229892 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 36229793  T
Q  122 aagttaaaggatgaattatgtaatttt 148  Q
    ||||||| |||  |||| |||||||||    
T  36229792 aagttaagggactaattgtgtaatttt 36229766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 8852021 - 8852079
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  8852021 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 8852079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 37513220 - 37513162
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  37513220 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 37513162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 48434015 - 48434147
Alignment:
Q  21 ttgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa---ctaatgaacgaaaatgttatctga 117  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||| | |||||||||| ||  ||||||    ||| | |||||| ||||| || |    
T  48434015 ttgaaaaaatctcataaaaaatgataagctattgtcattttataacataaaggactaaatcgtgacaaaaaaatatataaaggacgaaagtgttacctaa 48434114  T
Q  118 aattaagttaaaggatgaattatgtaattttgc 150  Q
    ||| ||||||| |||  |||| |||||||||||    
T  48434115 aataaagttaagggactaattgtgtaattttgc 48434147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 49984927 - 49984985
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  49984927 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 49984985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 43006969 - 43007029
Alignment:
Q  19 cattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||| || |||||||    
T  43006969 cattgaaaaaatctcattaaaa-tgataagatattgtcattttataacataaaaaactaaat 43007029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 44506187 - 44506049
Alignment:
Q  13 aaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatg 109  Q
    ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||  |  ||||||   ||| | |||||| ||    
T  44506187 aaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcgttacaaaaaaaagataaaggacgaaagtg 44506088  T
Q  110 ttatctgaaattaagttaaaggatgaattatgtaatttt 148  Q
    ||| || |||||||||||| |||| |||| |||||||||    
T  44506087 ttacctaaaattaagttaagggattaattgtgtaatttt 44506049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 10687790 - 10687936
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatc-gggatcaaaaaactaatgaac 102  Q
    |||||||||| ||| || |||||||||||||  | |||||| | |||||||||||||||||||||| || |||||||| || |  |||||  ||| | |     
T  10687790 aagaaacttagatttcaatgaaaaaatctcaaaataaattacacgatattgtcattttataacataaaacactaaatcaggtaaaaaaaagataaaggat 10687889  T
Q  103 gaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||| || ||||||||||||  || ||||| ||||||||||    
T  10687890 gaaagtgttacctaaaattaagttaagagacgaattgtgtaattttg 10687936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 9296598 - 9296643
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacata 69  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||    
T  9296598 aaaaaatctcataaaaaatgataagatattgtcattttataacata 9296643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 49711617 - 49711743
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga-tcaaaaaactaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| |||||||||||||| ||||||||| | | |||||||| | ||   |||||| ||| | |||||| ||||| || |||| |    
T  49711617 aaaaaatctcataaaaaatgataagatattgtca-tttataacaaaaaggactaaattgtgacaaaaaaaaataacggacgaaagtgttacctaaaataa 49711715  T
Q  123 agttaaaggatgaattatgtaattttgc 150  Q
    |||||| |||  ||||||||||||||||    
T  49711716 agttaagggactaattatgtaattttgc 49711743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 55009226 - 55009119
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| || ||||||||| ||||||||||||| | |||||||||| ||  ||||||  ||| | |||||| ||||| || |||| |    
T  55009226 aaaaaatctcataaaaaatgattagatattgttattttataacataaaggactaaatcgtgacaaaaaaagataaaggacgaaagtgttacctaaaataa 55009127  T
Q  123 agttaaag 130  Q
    ||||||||    
T  55009126 agttaaag 55009119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 11121413 - 11121359
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaa 79  Q
    ||||||||||| |||| | ||||||||||||||||||||||||| || |||||||    
T  11121413 aaaaatctcataaaaattgataagatattgtcattttataacatttaggactaaa 11121359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 44506288 - 44506389
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaactaatgaa---cgaaaatgttatctgaaattaagttaaaggatgaattatgtaatttt 148  Q
    |||| ||||||||||||| | ||||||||||  | ||||||| |||| ||   ||||||||||| || |||||||||||| |||| |||| |||||||||    
T  44506288 ttgttattttataacataaaggactaaatcgtta-caaaaaaataataaaggacgaaaatgttacctaaaattaagttaagggattaattgtgtaatttt 44506386  T
Q  149 gcc 151  Q
    |||    
T  44506387 gcc 44506389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 12012837 - 12012782
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    ||||| ||||| |||||| |||| |||||| |||||||||||||| ||||||||||    
T  12012837 aaaaacctcataaaaaatgataaaatattgacattttataacataaaagactaaat 12012782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 7603605 - 7603651
Alignment:
Q  19 cattgaaaaaatctcattaaaaattataagatattgtcattttataa 65  Q
    ||||||||||||||||| ||| || ||||||||||| ||||||||||    
T  7603605 cattgaaaaaatctcataaaatatgataagatattgacattttataa 7603651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 30306926 - 30306852
Alignment:
Q  7 aaacttaaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatc 81  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  30306926 aaactcaaatttcattgaaaaaaactcattaaaaattataagatattgtcattttataatataaaagactaaatc 30306852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 47193929 - 47194003
Alignment:
Q  8 aacttaaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||| ||| |||||||||||||||||||||||  ||||||||||||||||| |||||||| ||||||||||||    
T  47193929 aacttagatttcattgaaaaaatctcattaaaaaagataagatattgtcatttaataacataaaagactaaatcg 47194003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 7114080 - 7114208
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga-tcaaaaaactaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||| | ||   |||||| ||| | |||||| |||||||| |||| |    
T  7114080 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaattgtgacaaaaaaaaataaaggacgaaagtgttatctaaaataa 7114179  T
Q  123 agttaaaggatgaattatgtaattttgcc 151  Q
    |||||| |||  |||| ||||||||||||    
T  7114180 agttaatggactaattgtgtaattttgcc 7114208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 17611641 - 17611772
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| ||||||||||| |||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  17611641 aaaaaatctcataaaaaatgataagatattgacattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 17611740  T
Q  122 aagttaaaggatgaattatgtaattttgccta 153  Q
    ||||||| |||  |||||||||||||||||||    
T  17611741 aagttaagggactaattatgtaattttgccta 17611772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 2026850 - 2026720
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  2026850 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 2026751  T
Q  122 aagttaaaggatgaattatgtaattttgcct 152  Q
    ||||||| |||  |||| |||||||||||||    
T  2026750 aagttaagggactaattgtgtaattttgcct 2026720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 30002426 - 30002552
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||  ||| | |||||||||||| || |||| |    
T  30002426 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaagataaaggacgaaaatgttacctaaaataa 30002525  T
Q  123 agttaaaggatgaattatgtaattttg 149  Q
    |||||| |||  |||| ||| ||||||    
T  30002526 agttaagggactaattgtgttattttg 30002552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 1549456 - 1549325
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  1549456 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 1549357  T
Q  122 aagttaaaggatgaattatgtaattttgccta 153  Q
    ||||||| |||  |||| ||| ||||||||||    
T  1549356 aagttaagggactaattgtgttattttgccta 1549325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 12139153 - 12139095
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  12139153 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 12139095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 25780106 - 25780236
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga-tcaaaaaactaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||  ||   |||||| ||| | |||||| ||||| || |||| |    
T  25780106 aaaaaatctcataaaaaatgataagatattgtcattttataacataaatgactaaatcatgacaaaaaaaaataaaggacgaaagtgttacctaaaataa 25780205  T
Q  123 agttaaaggatgaattatgtaattttgccta 153  Q
    |||||| |||  |||| ||||||||| ||||    
T  25780206 agttaagggactaattgtgtaattttaccta 25780236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 17985501 - 17985635
Alignment:
Q  21 ttgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaa 118  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| ||| | || ||||||| ||  ||||||   ||| | |||||||||||| || ||    
T  17985501 ttgaaaaaatctcataaaaaatgataagatattgtcattttataatataaaggattaaatcgtgacaaaaaaaagataaaggacgaaaatgttacctaaa 17985600  T
Q  119 attaagttaaaggatgaattatgtaattttgccta 153  Q
    || ||||||| |||  |||| ||  ||||||||||    
T  17985601 ataaagttaagggactaattgtgctattttgccta 17985635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 25267317 - 25267181
Alignment:
Q  13 aaattccattgaaaaaatctcatta-aaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgt 110  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||| || ||    ||||||||||  |  ||||||  ||| | |||||| |||    
T  25267317 aaatttcattgaaaaaatctcattaaaaaatgataagatattgtcattttacaaaat----gactaaatcgtaacaaaaaaagataaaggacgaaagtgt 25267222  T
Q  111 tatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    ||||| ||||||| |||| |||| |||||| ||||||||||    
T  25267221 tatctaaaattaaattaagggattaattatataattttgcc 25267181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 30562912 - 30562782
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| |  || |||||| ||  ||||||  ||| | |||||| ||||| || |||| |    
T  30562912 aaaaaatctcataaaaaatgataagatattgtcattttataacataaagaaccaaatcgtgacaaaaaaagataaaggacgaaagtgttacctaaaataa 30562813  T
Q  123 agttaaaggatgaattatgtaattttgccta 153  Q
    |||||| |||  |||| ||| ||||||||||    
T  30562812 agttaagggactaattgtgttattttgccta 30562782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 12115094 - 12114948
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa----ctaatgaacgaaaat 108  Q
    ||||| ||||||||||||||||| |||||| |||| ||| | ||||||||||||||| | || |||||||  |  ||||||     ||| | | ||||||    
T  12115094 aaatttcattgaaaaaatctcataaaaaatgataaaatagtatcattttataacataaaggattaaatcgttacaaaaaaaaaagataaaggatgaaaat 12114995  T
Q  109 gttatctgaaattaagttaaaggatgaattatgtaattttgcctatt 155  Q
    |||| || |||||||||||| |||  ||||||||||||||| |||||    
T  12114994 gttacctaaaattaagttaagggactaattatgtaattttgtctatt 12114948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 40902548 - 40902602
Alignment:
Q  28 aatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||| |||||| ||||||||||||||| |||||||||| | ||||||||||    
T  40902548 aatctcataaaaaatgataagatattgtcatcttataacataaaggactaaatcg 40902602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 4969515 - 4969364
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcat-taaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa---ctaatg 99  Q
    |||||| | ||||| |||||||||||||||||  |||||| |||| ||| |||||||| |||||||| | ||||||||||  |  ||||||    ||| |    
T  4969515 aagaaaatcaaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcatttaataacataaaggactaaatcgttacaaaaaaaaagataaag 4969416  T
Q  100 aacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
     |||||| ||||| || ||||||||||||||||  | |||| ||||||||||    
T  4969415 gacgaaagtgttacctaaaattaagttaaaggactatttatataattttgcc 4969364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 19897382 - 19897451
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||| |||| |||||||||||| |||||| |||| ||| ||||||||||||||||| | || |||||||    
T  19897382 aaatttcattaaaaaaatctcataaaaaatgataaaatagtgtcattttataacataaaggattaaatcg 19897451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 13763483 - 13763432
Alignment:
Q  99 gaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgc 150  Q
    |||||||| | ||||||||||||||||||||| | ||||| |||||||||||    
T  13763483 gaacgaaagtattatctgaaattaagttaaagaacgaattttgtaattttgc 13763432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 40290077 - 40290128
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcct 152  Q
    |||||||||||| || |||||||||||| |||  ||||||||||||||||||    
T  40290077 acgaaaatgttacctaaaattaagttaagggactaattatgtaattttgcct 40290128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 9172243 - 9172291
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcatttta 62  Q
    ||||| |||| |||||||||||| |||||| |||||||||||||||||||    
T  9172243 aaatttcattaaaaaaatctcat-aaaaatgataagatattgtcatttta 9172291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 9172861 - 9172902
Alignment:
Q  108 tgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    ||||| || |||||||||||||||||||||| ||||||||||    
T  9172861 tgttacctaaaattaagttaaaggatgaattgtgtaattttg 9172902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 9180225 - 9180273
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcatttta 62  Q
    ||||| |||| |||||||||||| |||||| |||||||||||||||||||    
T  9180225 aaatttcattaaaaaaatctcat-aaaaatgataagatattgtcatttta 9180273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 9180843 - 9180884
Alignment:
Q  108 tgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    ||||| || |||||||||||||||||||||| ||||||||||    
T  9180843 tgttacctaaaattaagttaaaggatgaattgtgtaattttg 9180884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 44066925 - 44066997
Alignment:
Q  7 aaacttaaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    ||||| ||||| |||||||||| ||| || |||| | ||||||||||| |||||||||||||| | ||||||||    
T  44066925 aaactcaaatttcattgaaaaa-tcttataaaaattgataagatattgacattttataacataaatgactaaat 44066997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 12115247 - 12115299
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    |||||||||||| || |||||||||||| |||  |||| ||||||||||||||    
T  12115247 acgaaaatgttacctaaaattaagttaagggactaattgtgtaattttgccta 12115299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 33595448 - 33595320
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| |||||||||||||| || ||||     
T  33595448 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaagaacgaaaatgttacctaaaata 33595349  T
Q  122 aagttaaaggatgaattatgtaattttgc 150  Q
    ||||||| |||  |||| |||||||||||    
T  33595348 aagttaagggactaattgtgtaattttgc 33595320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 4243052 - 4242921
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  4243052 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 4242953  T
Q  122 aagttaaaggatgaattatgtaattttgccta 153  Q
    || ||||||||  |||| ||||||||||||||    
T  4242952 aaattaaaggactaattgtgtaattttgccta 4242921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 3218358 - 3218490
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  3218358 aaaaaatctcat-aaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 3218456  T
Q  122 aagttaaaggatgaattatgtaattttgcctatt 155  Q
    ||||||| |||  |||| ||||||||||||||||    
T  3218457 aagttaagggactaattgtgtaattttgcctatt 3218490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 10810181 - 10810248
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    ||||| ||||||||||||||||| |||||| |||| |||||||||||||||| |||| ||||||||||    
T  10810181 aaatttcattgaaaaaatctcataaaaaataataaaatattgtcattttatatcataaaagactaaat 10810248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 3922755 - 3922884
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  3922755 aaaacatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 3922854  T
Q  122 aagttaaaggatgaattatgtaattttgcc 151  Q
    ||||||| |||  |||| ||||||||||||    
T  3922855 aagttaagggactaattgtgtaattttgcc 3922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 6755046 - 6754988
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  6755046 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 6754988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 23068914 - 23068971
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||    
T  23068914 aaaaaatctcataaaaaatgataagatattgtcattttataacata-aagactaaatcg 23068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 14763447 - 14763392
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaa 79  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||    
T  14763447 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaa 14763392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 20491709 - 20491767
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgg 83  Q
    ||||||||||||||||| | |||||||||||||||||||||||||| | || ||||||||    
T  20491709 aaaaaatctcattaaaa-tgataagatattgtcattttataacataaatgattaaatcgg 20491767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 12473169 - 12473217
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||||| |||||| |||||| | |||||| |||||||||||||||||||    
T  12473169 acgaaagtgttatatgaaatgatgttaaatgatgaattatgtaattttg 12473217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 20491578 - 20491530
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||||||||||| || ||||||||||||| ||  |||||||||||||||    
T  20491578 acgaaaatgttacctaaaattaagttaaaagacaaattatgtaattttg 20491530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 23163496 - 23163628
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  23163496 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 23163595  T
Q  122 aagttaaaggatgaattatgtaattttgcctat 154  Q
    ||||||| |||  |||| |||||||||||||||    
T  23163596 aagttaagggactaattgtgtaattttgcctat 23163628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 152
Target Start/End: Original strand, 48419433 - 48419563
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||||||||| || ||||     
T  48419433 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaaatgttacctaaaata 48419532  T
Q  122 aagttaaaggatgaattatgtaattttgcct 152  Q
    ||||||| |||  |||| ||| |||||||||    
T  48419533 aagttaagggactaattgtgttattttgcct 48419563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 55140329 - 55140198
Alignment:
Q  21 ttgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaa 119  Q
    ||||||||||||||| |||||| |||||||||||||||||||||| ||| | |||||||||| ||  ||||||  ||| | |||||| ||||| || |||    
T  55140329 ttgaaaaaatctcataaaaaatgataagatattgtcattttataaaataaaggactaaatcgtgacaaaaaaagataaaggacgaaagtgttacctaaaa 55140230  T
Q  120 ttaagttaaaggatgaattatgtaattttgcc 151  Q
    | ||||||| |||| |||  ||||||||||||    
T  55140229 taaagttaagggattaatcgtgtaattttgcc 55140198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 33692391 - 33692262
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  33692391 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 33692292  T
Q  122 aagttaaaggatgaattatgtaattttgcc 151  Q
    ||||||| |||  |||| ||||||||||||    
T  33692291 aagttaagggactaattgtgtaattttgcc 33692262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 37872898 - 37872767
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa----ctaatgaacgaaaatgttatctgaaa 119  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||     ||| | |||||||||||| || |||    
T  37872898 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaaaagataaaggacgaaaatgttacctaaaa 37872799  T
Q  120 ttaagttaaaggatgaattatgtaattttgcc 151  Q
    | ||||||| |||  |||| ||||||||||||    
T  37872798 taaagttaagggactaattgtgtaattttgcc 37872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 5260322 - 5260217
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa-ctaatgaacgaaaatgttatctgaaatta 122  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||  ||| | |||||||||||| || |||| |    
T  5260322 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaagataaaggacgaaaatgttacctaaaataa 5260223  T
Q  123 agttaa 128  Q
    ||||||    
T  5260222 agttaa 5260217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 50161333 - 50161460
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  50161333 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 50161432  T
Q  122 aagttaaaggatgaattatgtaattttg 149  Q
    ||||||| |||  |||| ||||||||||    
T  50161433 aagttaagggactaattgtgtaattttg 50161460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 26202672 - 26202593
Alignment:
Q  4 aagaaacttaaattccattgaaaaaa-tctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||| ||||||| | ||||||||| |||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  26202672 aagaaaattaaatttctttgaaaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 26202593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 49621568 - 49621438
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||| ||||||| |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  49621568 aaaacatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 49621469  T
Q  122 aagttaaaggatgaattatgtaattttgcct 152  Q
    ||||||| |||  |||| |||||||||||||    
T  49621468 aagttaagggactaattgtgtaattttgcct 49621438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 3546614 - 3546490
Alignment:
Q  28 aatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa---ctaatgaacgaaaatgttatctgaaattaag 124  Q
    |||||||| |||||| |||||||||||||||||||||||||| | |||||||||| || |||||||    ||| | || ||| ||||| || |||| |||    
T  3546614 aatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcgtgaccaaaaaaaagataaaggacaaaagtgttacctaaaataaag 3546515  T
Q  125 ttaaaggatgaattatgtaattttg 149  Q
    |||| |||  |||||||||||||||    
T  3546514 ttaagggactaattatgtaattttg 3546490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 9526025 - 9526083
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  9526025 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 9526083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 13294732 - 13294674
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  13294732 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 13294674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 28458738 - 28458796
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  28458738 aaaaaatctcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 28458796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 52690312 - 52690370
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  52690312 aaaaaatctcataaaaaatgataagatattgtcattttataacataaacgactaaatcg 52690370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 2686120 - 2685985
Alignment:
Q  13 aaattccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaactaatgaacgaaaatgtta 112  Q
    ||||| ||||||||||||||||| |||||| |||| |||  |||||||||||||||| | ||||||||||  | |||||||  || | |||||| |||||    
T  2686120 aaatttcattgaaaaaatctcat-aaaaatgataaaatagcgtcattttataacataaaggactaaatcgtta-caaaaaaaaaaag-acgaaagtgtta 2686024  T
Q  113 tctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
     || |||||||||||| |||  |||| ||||||||||||    
T  2686023 cctaaaattaagttaagggactaattgtgtaattttgcc 2685985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 20931193 - 20931251
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  20931193 aaaaaatatcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 20931251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 21053512 - 21053570
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||||||||||||| ||| | ||||||||||    
T  21053512 aaaaaatctcataaaaaatgataagatattgtcattttataatataaaggactaaatcg 21053570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 22335567 - 22335434
Alignment:
Q  19 cattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga-tcaaaaaactaatgaacgaaaatgttatctga 117  Q
    |||||||||||| |||| |||||| | ||||||||||||||||||||| || | || |||||||| |  ||||||  |||   |||||| ||||| ||||    
T  22335567 cattgaaaaaat-tcataaaaaatgagaagatattgtcattttataacgtaaaggaataaatcggaacacaaaaagataaaagacgaaagtgttacctga 22335469  T
Q  118 aattaagttaaaggatgaattatgtaattttgccta 153  Q
    ||||||||||| ||| ||| | ||||||||||||||    
T  22335468 aattaagttaaggga-gaactgtgtaattttgccta 22335434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 23549714 - 23549769
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaa 79  Q
    |||||||||||| |||||| || ||||||||||||||||||||||| | |||||||    
T  23549714 aaaaaatctcataaaaaatgatgagatattgtcattttataacataaaggactaaa 23549769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 33369641 - 33369582
Alignment:
Q  24 aaaaaatctcattaaaaatt-ataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| ||||| | |||||||||||||||||||||||||| | ||||||||||    
T  33369641 aaaaaatctcataaaaaaatgataagatattgtcattttataacataaatgactaaatcg 33369582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 563700 - 563768
Alignment:
Q  15 attccattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga 85  Q
    |||||||||||||||||||| ||||||| | ||||||||| |||||||||||| | | |||||||||||||    
T  563700 attccattgaaaaaatctca-taaaaatgacaagatattg-cattttataacacaaaggactaaatcggga 563768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 153
Target Start/End: Original strand, 2686282 - 2686332
Alignment:
Q  103 gaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    |||||||||| || ||||||||||||||||| |||| ||||||||||||||    
T  2686282 gaaaatgttagctaaaattaagttaaaggattaattgtgtaattttgccta 2686332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 21707819 - 21707877
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||| | |||||| ||||||||||||||||| |||||||| | ||||||||||    
T  21707819 aaaaaatctcttaaaaaatgataagatattgtcatttaataacataaaggactaaatcg 21707877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 41689512 - 41689462
Alignment:
Q  32 tcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  41689512 tcataaaaaatgataagatattgtcattttataacataaaggactaaatcg 41689462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 42857018 - 42857076
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||||||||| |||||| |||||||||||  ||||||||||||| | ||||||||||    
T  42857018 aaaaaatctcataaaaaatgataagatattgcaattttataacataaaggactaaatcg 42857076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 3818265 - 3818207
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggga 85  Q
    |||||||||||  |||||  |||||||||| ||||||||||||||||||||||||| ||||    
T  3818265 aaaaatctcat--aaaatgctaagatattgacattttataacatataagactaaattggga 3818207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 50977658 - 50977723
Alignment:
Q  15 attccattgaaaa-aatctcattaaaaattataagatattgtcattttataacatataagactaaa 79  Q
    ||||||||||||| |||||||| |||||| ||| |||||||||||||||||| ||| | |||||||    
T  50977658 attccattgaaaaaaatctcataaaaaatgatacgatattgtcattttataatataaaggactaaa 50977723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 150
Target Start/End: Original strand, 53232306 - 53232444
Alignment:
Q  15 attccattgaaaa-aatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaactaatga---acgaaaatgt 110  Q
    ||||||||||||| |||||||  |||||| |||||||||||||||||||||| ||| | |||||||||  ||| ||||||  ||| |   |||||| | |    
T  53232306 attccattgaaaagaatctcac-aaaaataataagatattgtcattttataatataaaggactaaatcatgataaaaaaataaataaatgacgaaagtat 53232404  T
Q  111 tatctgaaattaagttaaaggatgaattatgtaattttgc 150  Q
    ||| | |||||||||||| |||  |||| |||||||||||    
T  53232405 tatataaaattaagttaagggacaaattgtgtaattttgc 53232444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 3810690 - 3810637
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacatataagactaaat 80  Q
    |||||||||||  |||||  |||||||||| |||||||||||||||||||||||||    
T  3810690 aaaaatctcat--aaaatgctaagatattgacattttataacatataagactaaat 3810637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 46143487 - 46143618
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcggg--atcaaaaaactaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||| |||||| |||| ||||| ||||||||||| ||| | |||||||||| |  |  |||||| ||| | |||||| ||||| || ||||     
T  46143487 aaaaaatctcataaaaaatgataaaatattatcattttataatataaaggactaaatcgtgacaaaaaaaaaataaaggacgaaagtgttacctaaaata 46143586  T
Q  122 aagttaaaggatgaattatgtaattttgccta 153  Q
    ||||||| | |  |||| ||||||||||||||    
T  46143587 aagttaaggcactaattgtgtaattttgccta 46143618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 55742852 - 55742959
Alignment:
Q  52 ttgtcattttataacatataagactaaatcggg--atcaaaaaactaatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||||||||||| | |||||||||| |  |  |||||| ||| | |||||| |||||||| |||| |||||||||||  |||| ||||||||||    
T  55742852 ttgttattttataacatagaggactaaatcgtgacaaaaaaaaaataaaggacgaaagtgttatctaaaataaagttaaaggactaattgtgtaattttg 55742951  T
Q  150 cctattat 157  Q
    ||| ||||    
T  55742952 ccttttat 55742959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 30055344 - 30055281
Alignment:
Q  20 attgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    ||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  30055344 attgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcg 30055281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 42856904 - 42856802
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatc-aaaaaactaatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgc 150  Q
    |||| ||||||||||||| |||||||||||| || | |||||| ||| | |||||| ||||| || |||| || |||| |||  |||| |||||||||||    
T  42856904 ttgttattttataacataaaagactaaatcgtgaccaaaaaaaataaaggacgaaagtgttacctaaaataaaattaagggactaattgtgtaattttgc 42856805  T
Q  151 cta 153  Q
    |||    
T  42856804 cta 42856802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 43914639 - 43914676
Alignment:
Q  43 tataagatattgtcattttataacatataagactaaatc 81  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  43914639 tataagatattgtcattttataacata-aagactaaatc 43914676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 12825008 - 12825057
Alignment:
Q  99 gaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaatttt 148  Q
    ||||||||||||||| | ||||||||||||| ||  ||||||||||||||    
T  12825008 gaacgaaaatgttatttaaaattaagttaaatgactaattatgtaatttt 12825057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 25297817 - 25297679
Alignment:
Q  19 cattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa----ctaatgaacgaaaatgttat 113  Q
    |||||||||||||||||  |||||| |||| ||  ||||||||||||||||| | ||||||||||  |  ||||||     ||| | |||||| |||||     
T  25297817 cattgaaaaaatctcatacaaaaatgataaaattgtgtcattttataacataaaggactaaatcgttacaaaaaaaaaagataaaggacgaaagtgttac 25297718  T
Q  114 ctgaaattaagttaaaggatgaattatgtaattttgcct 152  Q
    || |||||||||||| |||  |||| |||||||||||||    
T  25297717 ctaaaattaagttaagggactaattgtgtaattttgcct 25297679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 30055499 - 30055551
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    |||||||||||| || |||||||||||| |||  |||| ||||||||||||||    
T  30055499 acgaaaatgttacctaaaattaagttaagggactaattgtgtaattttgccta 30055551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1577 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1577
Description:

Target: scaffold1577; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 1083 - 1219
Alignment:
Q  19 cattgaaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctg 116  Q
    ||||||||||||||||| |||||| |||| |||| ||||||||||| |||| |||||||||||| ||  ||||||   ||| |||||| | ||||| ||     
T  1083 cattgaaaaaatctcataaaaaataataaaatatagtcattttatatcataaaagactaaatcgtgacaaaaaaaagataaagaacgagagtgttaccta 1182  T
Q  117 aaattaagttaaaggatgaattatgtaattttgccta 153  Q
    ||||||| ||||||||  |||| ||||||||| ||||    
T  1183 aaattaaattaaaggactaattgtgtaattttaccta 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 137132 - 137261
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||  |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  137132 aaaaaatctca--aaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 137229  T
Q  122 aagttaaaggatgaattatgtaattttgccta 153  Q
    |||| || |||  |||||||||||||||||||    
T  137230 aagtaaatggactaattatgtaattttgccta 137261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 137017 - 136914
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaac--taatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||||||||||| | |||||||||| ||  ||||||   ||| | |||||||||||| || |||| ||||||| |||  |||| ||||||||||    
T  137017 ttgttattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaaatgttacctaaaataaagttaagggactaattgtgtaattttg 136918  T
Q  150 ccta 153  Q
    ||||    
T  136917 ccta 136914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 153
Target Start/End: Original strand, 330413 - 330542
Alignment:
Q  24 aaaaaatctcattaaaaattataagatattgtcattttataacatataagactaaatcgggatcaaaaaa--ctaatgaacgaaaatgttatctgaaatt 121  Q
    |||||||||||  |||||| |||||||||||||||||||||||||| | |||||||||| ||  ||||||   ||| | |||||| ||||| || ||||     
T  330413 aaaaaatctca--aaaaatgataagatattgtcattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaagtgttacctaaaata 330510  T
Q  122 aagttaaaggatgaattatgtaattttgccta 153  Q
    |||| || |||  |||||||||||||||||||    
T  330511 aagtaaatggactaattatgtaattttgccta 330542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 330298 - 330195
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaac--taatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttg 149  Q
    |||| ||||||||||||| | |||||||||| ||  ||||||   ||| | |||||||||||| || |||| ||||||| |||  |||| ||||||||||    
T  330298 ttgttattttataacataaaggactaaatcgtgacaaaaaaaagataaaggacgaaaatgttacctaaaataaagttaagggactaattgtgtaattttg 330199  T
Q  150 ccta 153  Q
    ||||    
T  330198 ccta 330195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 12039 - 11940
Alignment:
Q  52 ttgtcattttataacatataagactaaatcgggatcaaaaaactaatgaacgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgcc 151  Q
    |||| ||||||||||||| | ||||||||||  | |||||||  || |||||||||||||| || |||||||||||| |||  |||| ||||||||||||    
T  12039 ttgttattttataacataaaggactaaatcgataccaaaaaaaaaaagaacgaaaatgttacctaaaattaagttaagggactaattgtgtaattttgcc 11940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 12133 - 12199
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacata 69  Q
    |||||| | ||||| |||||||||||||||||  |||||| |||| ||| |||||||||||||||||    
T  12133 aagaaaatcaaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacata 12199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 12747 - 12668
Alignment:
Q  4 aagaaacttaaattccattgaaaaaatctcatt-aaaaattataagatattgtcattttataacatataagactaaatcg 82  Q
    |||||| | ||||| |||||||||||||||||  |||||| |||| ||| ||||||||||||||||| | ||||||||||    
T  12747 aagaaaatcaaatttcattgaaaaaatctcatacaaaaatgataaaatagtgtcattttataacataaaggactaaatcg 12668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 12892 - 12944
Alignment:
Q  101 acgaaaatgttatctgaaattaagttaaaggatgaattatgtaattttgccta 153  Q
    ||||||||||||||| |||||||||||| |||  |||| ||||||||||||||    
T  12892 acgaaaatgttatctaaaattaagttaagggactaattgtgtaattttgccta 12944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 15254 - 15298
Alignment:
Q  25 aaaaatctcattaaaaattataagatattgtcattttataacata 69  Q
    |||||||| || ||||||||||||| |||||||||||||||||||    
T  15254 aaaaatcttataaaaaattataagaaattgtcattttataacata 15298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University