View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_high_104 (Length: 248)

Name: NF3582_high_104
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_high_104
NF3582_high_104
[»] chr6 (3 HSPs)
chr6 (18-245)||(24702286-24702513)
chr6 (59-199)||(8962905-8963045)
chr6 (65-108)||(8956316-8956359)
[»] chr7 (2 HSPs)
chr7 (18-246)||(38159799-38160026)
chr7 (152-243)||(47397260-47397351)
[»] chr4 (2 HSPs)
chr4 (27-248)||(3241307-3241528)
chr4 (59-120)||(27026057-27026118)
[»] chr8 (1 HSPs)
chr8 (18-108)||(9522241-9522331)
[»] chr2 (1 HSPs)
chr2 (65-108)||(9041694-9041737)
[»] chr3 (2 HSPs)
chr3 (62-112)||(19145906-19145956)
chr3 (163-248)||(41170913-41170998)
[»] chr1 (1 HSPs)
chr1 (62-118)||(26487183-26487239)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 24702286 - 24702513
Alignment:
Q  18 ataatatagttaagatcatgcacaaaatagtaagtgataccgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaatttt 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  24702286 ataatatagttaagatcatgcacaaaatagtaagtgatatcgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaaattagtttt 24702385  T
Q  118 ttatagtatccaaccaaacatgcattcgacggtcgtaactaatttttcccagcatcatcttgctcaccaggcttttggtactaactccctagagactcaa 217  Q
    | ||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24702386 tgataatatccaaccaaacatgcattcgacagtcgtaactattttttcccagcatcatcttgctcaccaggcttttggtactaactccctggagactcaa 24702485  T
Q  218 actcatactccaaggatggtgagttggc 245  Q
    ||||||||||||||||||||||||||||    
T  24702486 actcatactccaaggatggtgagttggc 24702513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 8963045 - 8962905
Alignment:
Q  59 gggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaattttttatagtatccaaccaaacatgcattcgacggtcgtaacta 158  Q
    ||||| |||||| ||||||||||||| ||||||| |||||||||||||||  || ||||| | | ||| || ||||| ||||| ||||| ||||  || |    
T  8963045 gggatccttgcacctttgattatgtgaaatattttgtgtacaagaaacaaactagtttttgacaatattcatccaaatatgcactcgactgtcgcgacaa 8962946  T
Q  159 atttttcccagcatcatcttgctcaccaggcttttggtact 199  Q
      |||||||| | || |||||| ||| | ||||||||||||    
T  8962945 tattttcccaacttcttcttgcacacaaagcttttggtact 8962905  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 8956316 - 8956359
Alignment:
Q  65 cttgcagctttgattatgtggaatatttggtgtacaagaaacaa 108  Q
    |||||| ||||||||||||| ||||||| |||||||||||||||    
T  8956316 cttgcacctttgattatgtgaaatattttgtgtacaagaaacaa 8956359  T

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Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 38160026 - 38159799
Alignment:
Q  18 ataatatagttaagatcatgcacaaaatagtaagtgataccgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaatttt 117  Q
    ||||||||| ||||||||| ||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  38160026 ataatatagctaagatcatccacaaaatagtaagtgatgtcggaattcttgcacctttgattatgtggaatatttggtgtacaagaaacaagttagtttt 38159927  T
Q  118 ttatagtatccaaccaaacatgcattcgacggtcgtaacta-atttttcccagcatcatcttgctcaccaggcttttggtactaactccctagagactca 216  Q
    | ||| ||||||||||||||||||||| || || |||||||  |||||| ||||||||||||||||||||||||||||||||||||||| | || ||||     
T  38159926 tgataatatccaaccaaacatgcattcaaccgttgtaactatttttttctcagcatcatcttgctcaccaggcttttggtactaactccttggatactcg 38159827  T
Q  217 aactcatactccaaggatggtgagttggca 246  Q
     |||||||  ||||||||||||||||||||    
T  38159826 tactcata--ccaaggatggtgagttggca 38159799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 47397351 - 47397260
Alignment:
Q  152 gtaactaatttttcccagcatcatcttgctcaccaggcttttggtactaactccctagagactcaaactcatactccaaggatggtgagttg 243  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||    
T  47397351 gtaactattttttccaagcatcatcttgctcagcaggcttttggtactaactccctagatactcgtactcttactccaaggatggtgagttg 47397260  T

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Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 27 - 248
Target Start/End: Complemental strand, 3241528 - 3241307
Alignment:
Q  27 ttaagatcatgcacaaaatagtaagtgataccgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaattttttatagtat 126  Q
    |||||||||| || |||||||||||||||  ||| ||||||||| | || ||||||||||||||||||||||||| ||||| |||| ||||| ||| |||    
T  3241528 ttaagatcatccaaaaaatagtaagtgatgtcggtattcttgcatcgtttattatgtggaatatttggtgtacaaaaaacatgttagtttttgataatat 3241429  T
Q  127 ccaaccaaacatgcattcgacggtcgtaactaatttttcccagcatcatcttgctcaccaggcttttggtactaactccctagagactcaaactcatact 226  Q
    ||||||||||||| ||| |||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||| | || ||||  |||||||||    
T  3241428 ccaaccaaacatgtatttgacggtcgcaactattttttcccaacatcatcttgctcatcaggcttttggtactaactccttggatactcgtactcatact 3241329  T
Q  227 ccaaggatggtgagttggcagc 248  Q
    ||||||||||||||||||||||    
T  3241328 ccaaggatggtgagttggcagc 3241307  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 27026118 - 27026057
Alignment:
Q  59 gggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaatttttta 120  Q
    ||||||||||   ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  27026118 gggattcttgtgtctttgattatgtgaaatatttggtgtacaagaaacaagtcaatttttta 27026057  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 9522241 - 9522331
Alignment:
Q  18 ataatatagttaagatcatgcacaaaatagtaagtgataccgggattcttgcagctttgattatgtggaatatttggtgtacaagaaacaa 108  Q
    |||||||||||||| | || ||||||||||| |  ||||  ||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  9522241 ataatatagttaaggtaatccacaaaatagtgaaggatattgggatccttgcacctttgattatgtggaatatttggtgtacaagaaacaa 9522331  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 9041694 - 9041737
Alignment:
Q  65 cttgcagctttgattatgtggaatatttggtgtacaagaaacaa 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  9041694 cttgcacctttgattatgtggaatatttggtgtacaagaaacaa 9041737  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 19145956 - 19145906
Alignment:
Q  62 attcttgcagctttgattatgtggaatatttggtgtacaagaaacaagtta 112  Q
    ||||||||| |||||||||||||  ||||||| ||||||||||||||||||    
T  19145956 attcttgcacctttgattatgtgtgatatttgatgtacaagaaacaagtta 19145906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 41170913 - 41170998
Alignment:
Q  163 ttcccagcatcatcttgctcaccaggcttttggtactaactccctagagactcaaactcatactccaaggatggtgagttggcagc 248  Q
    |||||| | ||||||||| |||   |||||||||||| ||||  ||| |||||| | ||  |||||||||||||||||||||||||    
T  41170913 ttcccaacttcatcttgcacacagagcttttggtactgactcattagtgactcatattcccactccaaggatggtgagttggcagc 41170998  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 26487183 - 26487239
Alignment:
Q  62 attcttgcagctttgattatgtggaatatttggtgtacaagaaacaagttaattttt 118  Q
    ||||||||  |||| || ||||||||||||||||| |||||||||||| ||||||||    
T  26487183 attcttgctcctttaatcatgtggaatatttggtgcacaagaaacaagctaattttt 26487239  T

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