View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_105 (Length: 248)
Name: NF3582_high_105
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_105 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 29661609 - 29661391
Alignment:
| Q |
1 |
tctgtatcagtgcctcgtagccgctaatcaatcagattcgatctacaatttacacaatcttgctttatatggtggttttagtcctggtttttgaagtcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29661609 |
tctgtatcagtgcctcgtagccgctaatcaatcagattcgatctacaatttacacaatcttgctttatatggtggttttagtcctggtttttgaagtcat |
29661510 |
T |
|
| Q |
101 |
ggaaattcattctaaatgaaccttgttaggtcatgtaatgagctaggcagt--taatgttgttggtctaagtggagatggtaattataagcttatgattt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29661509 |
ggaaattcattctaaatgaaccttgttaggtcatgtaatgagctaggcagttataatgttgttggtctaagtggagatgataattataagcttatgattt |
29661410 |
T |
|
| Q |
199 |
gttctgtttgttgatgata |
217 |
Q |
| |
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|||||||||||||||||| |
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| T |
29661409 |
cttctgtttgttgatgata |
29661391 |
T |
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