View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_106 (Length: 247)
Name: NF3582_high_106
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_106 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 30 - 229
Target Start/End: Original strand, 28922370 - 28922568
Alignment:
| Q |
30 |
tatcacaattagattataaataagtgaaagtgatcctcttgaacataataaaatattaaaaggatatattatattgaacttggactgtgatatcggagtg |
129 |
Q |
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| T |
28922370 |
tatcacaattagattataaataagtgaaagtgatcctcttgagcataataaaatattaaa-ggatatattatattgaaatcagactgtgatatcggagtg |
28922468 |
T |
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| Q |
130 |
catcgttgagaaatggaaaacaaacaacattaaaaggaagaatgcaagaagcagcacatgaatgccattattaacaccagccagtatgtttggcttctaa |
229 |
Q |
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| T |
28922469 |
catcactgagaaatggaaaacaaacaacattaaaaggaagaatgcaagaagcagcacatgaatgccattattaacaccagccagtatgtttggcttctaa |
28922568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 28912924 - 28913107
Alignment:
| Q |
45 |
ataaataagtgaaagtgatcctcttgaacataataaaatattaaaaggatatattatattgaacttggactgtgatatcggagtgcatcgttgagaaatg |
144 |
Q |
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|||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||| | |||||| |
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| T |
28912924 |
ataaataagtgaaagtgatcctcttgaaaataataaaaacattaaaggatatattatattgaactcggactgtgatatcggagtacatcggtaggaaatg |
28913023 |
T |
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| Q |
145 |
gaaaacaaacaacattaaaaggaagaatgcaagaagcagcacatgaatgccattattaacaccagccagtatgtttggcttctaa |
229 |
Q |
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| T |
28913024 |
g-aaataaacaacattaaaaggaagaaagcaagaagcaacacatcaatggggttattaacaccagccaatatatttggcttctaa |
28913107 |
T |
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