View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_110 (Length: 244)
Name: NF3582_high_110
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_110 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 41801737 - 41801960
Alignment:
| Q |
5 |
ttctcctatgcctcaaaatttaatgtagacaataaccaaacaagaaagaagtaaaggctagttgtcacgtgaattaannnnnnnnnnnngattaaatgga |
104 |
Q |
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| T |
41801737 |
ttctcctatgcctcaaaatttaatgtagacaataaccaaacaagaaagaagtaaaggctagttgtcacgtgaattaacttttattttttgattaaatgaa |
41801836 |
T |
|
| Q |
105 |
ttggttttta--aaaagaaaa--ctcaattaaattagtgttcatgagtttgaagtgtgtttttaccacctcttagaagtttgtttccctcaatcaaattt |
200 |
Q |
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| T |
41801837 |
ttggttttaattaaaagaaaaaactcaattaaattagtgttcatgagtttgaagtgtgtttttaccacctcttagaagtttgtttccctcaatcaaattt |
41801936 |
T |
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| Q |
201 |
ccttgtctctttcacaagccatga |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
41801937 |
ccttgtctctttcacaagccatga |
41801960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3382633 - 3382395
Alignment:
| Q |
1 |
ttatttctcctatgcctcaaaatttaatgtagacaataaccaaacaagaaagaa---gtaaaggctagttgtcacgtgaattaannnnnnnnnnnngatt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| | ||| |
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| T |
3382633 |
ttatttctcctatgcctcaaaatttaatgtagacaataacctaacaagaaagaaaaagtacgggctagttgtcacgtgaattcatttttattttttaatt |
3382534 |
T |
|
| Q |
98 |
aaatggattggttttt------aaaaagaaaactcaattaaattagtgttcatgagtttgaagtgtgtttttaccacctcttagaagtttgtttccctca |
191 |
Q |
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||||| ||| |||||| ||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| || |||||||||||||| |
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| T |
3382533 |
aaatgaattagtttttttttaaaaaaaaaaaacttaattaaattagcgttcaggagtttgaagtgtgcttttaccacctctcaggagtttgtttccctcg |
3382434 |
T |
|
| Q |
192 |
atcaaatttccttgtctctttcacaagccatgaggtttc |
230 |
Q |
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|| | |||| ||||||||||||||||||||| ||||| |
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| T |
3382433 |
ataatattttactgtctctttcacaagccatgaagtttc |
3382395 |
T |
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