View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_113 (Length: 241)
Name: NF3582_high_113
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_113 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 5159544 - 5159762
Alignment:
| Q |
18 |
aatacctaccaaccaaactaatcacattatcctcaacagctctttcacaaccacaaaccaaaccagaaaaaacatcactcattctcagactacacaaagg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159544 |
aataactaccaaccaaactaatcacattatcctcaacagctctttcacaaccacaaaccaaaccagaaaaaacatcactcattctcagactacacaaagg |
5159643 |
T |
|
| Q |
118 |
tcacaaacagaggggnnnnnnnctacaaattctgaagaatagagagagcataaaaaagacgaggtatcttgttcttgtgataagataatatgctcttacg |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5159644 |
tcacaaacagaggggaaaaaaactacaaattctgaagaatagagagagcataaaaaagacgaggtatcttgttcttgtgataagataatatgctcttacg |
5159743 |
T |
|
| Q |
218 |
tggcaacatctctgctcct |
236 |
Q |
| |
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||||||||||| ||||||| |
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| T |
5159744 |
tggcaacatctatgctcct |
5159762 |
T |
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