View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_114 (Length: 241)
Name: NF3582_high_114
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_114 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7461020 - 7460796
Alignment:
| Q |
1 |
ctgttttctccacctttgttcttcttactacgcttgcgtcttggctttggtttcttctctcctnnnnnnncataacaaaaatattataacttcatagaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7461020 |
ctgttttctccacctttgttcttcttactacgcttgcgtcttggctttggtttcttctctcctaaaaaaacataacaaaaatattataacttcatagaaa |
7460921 |
T |
|
| Q |
101 |
ttttgatgatacatataaaatgttatgtattaatttaatatgatactaaccttgttgagaaatgatttgggtgtattcacaagctgggaataactgagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7460920 |
ttttgatgatacatataaaatgttatgtattaatttaatatgatactaaccttgttgagaaatgatttgggtgtattcacaagctgggaataactgagac |
7460821 |
T |
|
| Q |
201 |
ataagcatcatttggtcttgatgat |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
7460820 |
ataagcatcatttggtcttgatgat |
7460796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7446076 - 7445852
Alignment:
| Q |
1 |
ctgttttctccacctttgttcttcttactacgcttgcgtcttggctttggtttcttctctcctnnnnnnncataacaaaaatattataacttcatagaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7446076 |
ctgttttctccacctttgttcttcttactacgcttgcgtcttggctttggtttcttctctcctaaaaaaacataacaaaaatattataacttcatagaaa |
7445977 |
T |
|
| Q |
101 |
ttttgatgatacatataaaatgttatgtattaatttaatatgatactaaccttgttgagaaatgatttgggtgtattcacaagctgggaataactgagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7445976 |
ttttgatgatacatataaaatgttatgtattaatttaatatgatgctaaccttgttgagaaatgatttgggtgtattcacaagctgggaataactgagac |
7445877 |
T |
|
| Q |
201 |
ataagcatcatttggtcttgatgat |
225 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
7445876 |
ataagcatcatttggtcttgatgat |
7445852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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