View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_120 (Length: 237)
Name: NF3582_high_120
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_120 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 34127376 - 34127181
Alignment:
| Q |
19 |
cacagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
118 |
Q |
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| T |
34127376 |
cacagaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
34127277 |
T |
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| Q |
119 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatg |
214 |
Q |
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| T |
34127276 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatg |
34127181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 34133649 - 34133456
Alignment:
| Q |
19 |
cacagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||| ||||| | ||| ||||| |||||| | |
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| T |
34133649 |
cacagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaa |
34133550 |
T |
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| Q |
119 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttga |
212 |
Q |
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| T |
34133549 |
acttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttga |
34133456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 34137560 - 34137365
Alignment:
| Q |
19 |
cacagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
118 |
Q |
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||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||||| | ||| ||||| |||||| | |
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| T |
34137560 |
cacagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaa |
34137461 |
T |
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| Q |
119 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatg |
214 |
Q |
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| T |
34137460 |
acttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatg |
34137365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 34141223 - 34141028
Alignment:
| Q |
19 |
cacagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgata |
118 |
Q |
| |
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|||||||||||||||||| |||| |||||| |||| ||||| |||||||| ||||| |||||||||||| ||||||||| | ||| |||||||||||| | |
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| T |
34141223 |
cacagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaa |
34141124 |
T |
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| Q |
119 |
gcttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatg |
214 |
Q |
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|||| || ||| ||||||||||||||||||| | ||||| |||||| |||| |||||||||| |||||||||||| | ||||| || ||||||| |
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| T |
34141123 |
gcttagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatg |
34141028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 34143705 - 34143638
Alignment:
| Q |
20 |
acagaccaaaactctccatcatcgaagccgaaggaattcccgaaattgacctctcaccaatattccac |
87 |
Q |
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||||||||||||||||||||| | |||| ||||| ||||||| ||| ||||||| |||||| ||||| |
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| T |
34143705 |
acagaccaaaactctccatcacccaagctgaaggcattcccgtaatcaacctctccccaataatccac |
34143638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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