View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_122 (Length: 237)
Name: NF3582_high_122
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_122 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38225405 - 38225626
Alignment:
| Q |
1 |
agcagctatacgttacagcaaacttaccacataggcatatgatacaagaaagagtggactaagccaaaataattacacactatgtatcactagaacacgg |
100 |
Q |
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| T |
38225405 |
agcagctatacgttacagcaaacttaccacatagccatatgatacaagaaagagtggactaagccaaaataattacacactatgtatcactagaacacgg |
38225504 |
T |
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| Q |
101 |
cattgatgcaaacttcatacttgtctttatcctatagctagccaaatgcagaaagttttgtattattcagtcacactcagacttgtctttattcctcttt |
200 |
Q |
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| T |
38225505 |
cattgatgcaaacttcatacttgtcttcatcctatagctagccaaatgcagaaagttttgtattattcagtcacactcagacttgtctttattcctcttt |
38225604 |
T |
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| Q |
201 |
tgatcaaatcatatattacttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38225605 |
tgatcaaatcatatattacttc |
38225626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 39 - 222
Target Start/End: Original strand, 38219337 - 38219529
Alignment:
| Q |
39 |
atgatacaagaaagagtggactaagccaaaataattacacactatgtatcactagaacacggcatt---------gatgcaaacttcatacttgtcttta |
129 |
Q |
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| T |
38219337 |
atgatacaagaaagagtggattaagccaaaataattacacactatgcatcactagaacacggcatttgaaatattgattcaaacttcagacttgtcttta |
38219436 |
T |
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| Q |
130 |
tcctatagctagccaaatgcagaaagttttgtattattcagtcacactcagacttgtctttattcctcttttgatcaaatcatatattacttc |
222 |
Q |
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| T |
38219437 |
tcctatagctagccaaatgcagaaagatttgtattattcagtcacactcagacttgtctttattcctcttttgatcaaatcatatattacttc |
38219529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 38212900 - 38212949
Alignment:
| Q |
20 |
aaacttaccacataggcatatgatacaagaaagagtggactaagccaaaa |
69 |
Q |
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| T |
38212900 |
aaacttatcacatagccatatgatacaagaaagagtgaattaaggcaaaa |
38212949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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