View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_128 (Length: 227)
Name: NF3582_high_128
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_128 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 1629944 - 1630135
Alignment:
| Q |
18 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagt |
113 |
Q |
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| T |
1629944 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagt |
1630043 |
T |
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| Q |
114 |
ataatttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactc |
205 |
Q |
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| T |
1630044 |
ataatttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactc |
1630135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 10820754 - 10820598
Alignment:
| Q |
18 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataa |
117 |
Q |
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| T |
10820754 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataa |
10820659 |
T |
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| Q |
118 |
tttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaa |
178 |
Q |
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| T |
10820658 |
tttaaatattataaacctatcttagtataaaattttagaacttcaaaatataaaataaaaa |
10820598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 1606646 - 1606689
Alignment:
| Q |
18 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
61 |
Q |
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| T |
1606646 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
1606689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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