View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_13 (Length: 544)
Name: NF3582_high_13
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 41709025 - 41709534
Alignment:
| Q |
1 |
ggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgattgattttaatccagttttcctcaaag |
100 |
Q |
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| T |
41709025 |
ggcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgattgattttaatccagttttcctcaaag |
41709124 |
T |
|
| Q |
101 |
ttaatttcttctgcaggagcagaagattctggagatagcttaaaatgcaacacagtttaaagcagattattgttttcttcaatagttatgccccatgttt |
200 |
Q |
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| T |
41709125 |
ttaatttcttctg----------------tggagatagcttaaaatgcaacacaatttaaagcagattattgttttcttcaatagttatgccccatgttt |
41709208 |
T |
|
| Q |
201 |
cttataacacaggctgcaatgtgcttagaaattgagagtgtatagacactttaaggtggcttgtttattaagaaaaactgacaagtactaccactattat |
300 |
Q |
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| T |
41709209 |
cttataacacaggctgcaatgtgcttagaaattgagagtgtatagacactttaaggtggcttgtgtattaagaaaaactgacaagtactaccactattat |
41709308 |
T |
|
| Q |
301 |
taaacttagttcacttgtcaacattttgacagcacccatatcagtgtagaaaactggacccatttcgtgttcagtatagaaaactgaacgcttgtatgac |
400 |
Q |
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| T |
41709309 |
taaacttagttcacttgtcaacattttgacagcacccatattagtgtagaaaactggacccatatcgtgttcagtatagaaaactgaacgcttgtatgac |
41709408 |
T |
|
| Q |
401 |
gtgcttgtccaatatcagatgcccgtgttacaattttctgcggttccgacaccaatataacgaatacaaaatttcactatagcaatgagtagatctgctc |
500 |
Q |
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| T |
41709409 |
gtgcttgtccaatatcagatgcccgtgttacaattttctgcagttccgacaccaatatatcgaatacaaaatttcactatagcaatgagtagatctgctc |
41709508 |
T |
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| Q |
501 |
agtggagtgggctaagattaggaact |
526 |
Q |
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| T |
41709509 |
agtggagtgggctaagattaggaact |
41709534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 376 - 500
Target Start/End: Complemental strand, 14111682 - 14111558
Alignment:
| Q |
376 |
atagaaaactgaacgcttgtatgacgtgcttgtccaatatcagatgcccgtgttacaattttctgcggttccgacaccaatataacgaatacaaaatttc |
475 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| || ||||||||| |||||| ||| ||||||||||||| |
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| T |
14111682 |
atagaaaactgaacgcttgtatgatgtgcttatccaatatcagatgcctgtgttacaattttatgaggttccgaccccaatacaacaaatacaaaatttc |
14111583 |
T |
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| Q |
476 |
actatagcaatgagtagatctgctc |
500 |
Q |
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| T |
14111582 |
actataggtatgagtagatttgctc |
14111558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 14112493 - 14112421
Alignment:
| Q |
2 |
gcgttttaaataatattcgcaatgataaatttccagtgatgtaattcaatatgactgagacagatgcaatgat |
74 |
Q |
| |
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| T |
14112493 |
gcgttttaaatagtattcgcaatgataaatttccagtgatgtaattcaatatgactaagacagatgcaatgat |
14112421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 14111806 - 14111755
Alignment:
| Q |
101 |
ttaatttcttctgcaggagcagaagattctggagatagcttaaaatgcaaca |
152 |
Q |
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|||| |||||||| ||||||| |||||| ||||||||||||||||||||||| |
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| T |
14111806 |
ttaacttcttctggaggagcaaaagattatggagatagcttaaaatgcaaca |
14111755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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