View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_133 (Length: 222)
Name: NF3582_high_133
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_133 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 46731166 - 46731349
Alignment:
| Q |
16 |
tatcatatcatgacactacaattacaaaaatgcaattccaatttccaactactaccattctaatttacctaggaaaacgcttggggtgcacatgcactcg |
115 |
Q |
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| T |
46731166 |
tatcatatcatgacactacaattacaaaaatgcaattccaatttccaa-----accattctaatttacctaggaaaacgcttggggtgcacatgcactcg |
46731260 |
T |
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| Q |
116 |
caaataagttcctggttcaacaaactgattcgcatcagttacacggaaagttttttgagcttctcttatagtttttcctttgagggaag |
204 |
Q |
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| T |
46731261 |
caaataagttcctggttcaacaaactgattcgcatcagttacacggaaagttttttgagcttctcttatagtttttcctttgagggaag |
46731349 |
T |
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Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 7927670 - 7927787
Alignment:
| Q |
81 |
tacctaggaaaacgcttggggtgcacatgcactcgcaaataagttcctggttcaacaaactgattcgcatcagttacacggaaagttttttgagcttctc |
180 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||| | |||||||||||||||| ||||| || ||||||| |
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| T |
7927670 |
tacctaggaaaacgcttagggtgcacgtgcactcgcaaatatgttcctggttcaacaaattgatccacatcagttacacggaacgttttctgtgcttctc |
7927769 |
T |
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| Q |
181 |
ttatagtttttcctttga |
198 |
Q |
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| T |
7927770 |
ttatagtttttcctttga |
7927787 |
T |
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