View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_high_142 (Length: 209)

Name: NF3582_high_142
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_high_142
NF3582_high_142
[»] chr8 (2 HSPs)
chr8 (13-190)||(15349319-15349496)
chr8 (80-152)||(4030303-4030375)
[»] chr4 (4 HSPs)
chr4 (77-177)||(48871009-48871109)
chr4 (77-177)||(48876313-48876413)
chr4 (77-177)||(48886695-48886795)
chr4 (82-181)||(48899185-48899284)
[»] chr3 (2 HSPs)
chr3 (81-159)||(11015007-11015085)
chr3 (81-151)||(11005444-11005514)
[»] chr2 (1 HSPs)
chr2 (80-151)||(29350897-29350968)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 15349496 - 15349319
Alignment:
Q  13 agcagagactctgtatacatagccacttgggatctaacaccccataaactctcccaatggggggaacgctctaacaactgcccattgtcatcatacttca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349496 agcagagactctgtatacatagccacttgggatctaacaccccataaactctcccaatggggggaacgctctaacaactgcccattgtcatcatacttca 15349397  T
Q  113 ccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaagtacagagttggat 190  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15349396 ccaattcaacaccaacatttattccaataatatcaccactctttgtacggcacaaagggtaaaagtacagagttggat 15349319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 4030303 - 4030375
Alignment:
Q  80 gctctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccact 152  Q
    |||||| |||||| || ||||||||||||||||||||||||  |||| ||| | |||||||||||||||||||    
T  4030303 gctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccact 4030375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 48871109 - 48871009
Alignment:
Q  77 aacgctctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaa 176  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||| ||||  || |  |||||||||||||||||| ||||||| |||||| ||| ||||    
T  48871109 aacgccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaa 48871010  T
Q  177 g 177  Q
    |    
T  48871009 g 48871009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 48876413 - 48876313
Alignment:
Q  77 aacgctctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaa 176  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||| ||||  || |  |||||||||||||||||| ||||||| |||||| ||| ||||    
T  48876413 aacgccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaa 48876314  T
Q  177 g 177  Q
    |    
T  48876313 g 48876313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 48886795 - 48886695
Alignment:
Q  77 aacgctctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaa 176  Q
    ||||| |||||||||| |||||||||||||||||||||||| ||| ||||  || |  |||||||||||||||||| ||||||| |||||| ||| ||||    
T  48886795 aacgccctaacaactgtccattgtcatcatacttcaccaatccaataccactatgtgctccaataatatcaccactttttgtacagcacaatggggaaaa 48886696  T
Q  177 g 177  Q
    |    
T  48886695 g 48886695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 48899284 - 48899185
Alignment:
Q  82 tctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccactatttgtacggcacaaagggtaaaagtaca 181  Q
    ||||||||||  |||||||||||||||||||||||| |||   || ||| | ||||||||||||  ||||| ||||||| |||||| |||||||||||||    
T  48899284 tctaacaactctccattgtcatcatacttcaccaatccaaattcaccatctgttccaataatatagccactttttgtacagcacaatgggtaaaagtaca 48899185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 11015007 - 11015085
Alignment:
Q  81 ctctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccactatttgta 159  Q
    ||||| |||||| |||||| |||||||||| ||||||||| ||||| ||||| ||||||||||| ||||||| ||||||    
T  11015007 ctctagcaactgaccattgccatcatactttaccaattcaccaccaccatttgttccaataataccaccactttttgta 11015085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 11005444 - 11005514
Alignment:
Q  81 ctctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccac 151  Q
    ||||| |||||| |||||| ||||||||||||||||| ||  |||| ||||| | |||||||||| |||||    
T  11005444 ctctagcaactgaccattgccatcatacttcaccaatccagtaccaccatttgtcccaataatatgaccac 11005514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 29350968 - 29350897
Alignment:
Q  80 gctctaacaactgcccattgtcatcatacttcaccaattcaacaccaacatttattccaataatatcaccac 151  Q
    |||||| |||||| || ||||||| ||||||||||||||||  |||| |||   ||||||||||||||||||    
T  29350968 gctctagcaactgtcctttgtcataatacttcaccaattcagtaccaccatccgttccaataatatcaccac 29350897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University