View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_high_18 (Length: 495)
Name: NF3582_high_18
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_18 |
 | |
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| [»] scaffold0655 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 329
Target Start/End: Complemental strand, 18314637 - 18314330
Alignment:
| Q |
21 |
tgcgggaatggtgggtagacaggagagatcgagtgatttgagtttctatgggaaaagagagatttgacagaggatcgtgttgaggtcatcttcatagcac |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
18314637 |
tgcgggaatggtgggttgacaggagagatcgagtcatttgagtttcaatgggaaaagagagatttgacagaggatcgtgttgaggtcat-ttcatagcac |
18314539 |
T |
|
| Q |
121 |
gtgaggtattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttaca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18314538 |
gtgaggtattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttaca |
18314439 |
T |
|
| Q |
221 |
gagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatcat |
320 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18314438 |
gagttattatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatcat |
18314339 |
T |
|
| Q |
321 |
aatttctat |
329 |
Q |
| |
|
||||||||| |
|
|
| T |
18314338 |
aatttctat |
18314330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 127 - 431
Target Start/End: Complemental strand, 8368505 - 8368196
Alignment:
| Q |
127 |
tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagttta--gttagttacagagt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8368505 |
tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagcttgtctggctagtaactagcttagaatagtttatagttagttacagagt |
8368406 |
T |
|
| Q |
225 |
tattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatcataatt |
324 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8368405 |
tattatcctatgcttctaggtacatgttagtaggcatgaggttataacaacctataaataacggttgtacaagctaattcaatcaatgagaatcataatt |
8368306 |
T |
|
| Q |
325 |
tctattccatttcacttttcataatatggtatcag-agcctttttctctctctt--agagagagagttagttacgattcagttacacattttccgccatt |
421 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
8368305 |
tctattccatttcacttctcataatatggtatcagtttcctttttctctctcttagagagagagagttagttacggttcagttacacattttccgccatt |
8368206 |
T |
|
| Q |
422 |
gatgcttgag |
431 |
Q |
| |
|
|||||||||| |
|
|
| T |
8368205 |
gatgcttgag |
8368196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 15091568 - 15091527
Alignment:
| Q |
51 |
gagtgatttgagtttctatgggaaaagagagatttgacagag |
92 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
15091568 |
gagtgatttgagtttcaatgggaaaattgagatttgacagag |
15091527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 127 - 431
Target Start/End: Complemental strand, 9849478 - 9849173
Alignment:
| Q |
127 |
tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttacagagtta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
9849478 |
tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagtttgtatgacaaataactaacttagaatagtttagttagttacagagtta |
9849379 |
T |
|
| Q |
227 |
ttatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatcataatttc |
326 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | | ||||||||||||| ||| |
|
|
| T |
9849378 |
ttatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataactgttgtacaagcaaataccagtaatgagaatcatatcttc |
9849279 |
T |
|
| Q |
327 |
tattccatttcacttttcataatatggtatcag-agcctttttctctctcttagagagagagttagttacgattcagttacacattttccgccattgatg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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|
| T |
9849278 |
tattccatttcacttttcataatatggtatcagttttatttttctctctcttagagagagaatcagttacgattcagttacacattttccgccattgatg |
9849179 |
T |
|
| Q |
426 |
cttgag |
431 |
Q |
| |
|
|||||| |
|
|
| T |
9849178 |
cttgag |
9849173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 207 - 350
Target Start/End: Complemental strand, 9843272 - 9843129
Alignment:
| Q |
207 |
tttagttagttacagagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | | |
|
|
| T |
9843272 |
tttagttagttacagagttattatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataactgttgtacaagcaaatacca |
9843173 |
T |
|
| Q |
307 |
tcaatgagaatcataatttctattccatttcacttttcataata |
350 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9843172 |
gtaatgagaatcatatcttctattccatttcacttttcataata |
9843129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 337
Target Start/End: Original strand, 40280424 - 40280576
Alignment:
| Q |
186 |
caagtaactagcttagaatagttt-agttagttacagagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaata |
284 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||| |||| || |||||||||||||||| |||||||| |||||| || ||||||||| |||||||| |
|
|
| T |
40280424 |
caagtaactagcttagattagttttagttagttactgagtaatgttcctatgcttctaggttcatgttagttagcatgtggatataacaacttataaata |
40280523 |
T |
|
| Q |
285 |
acagttgtacaagctaattcaatcaatgagaatcataatttctattccatttc |
337 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
40280524 |
cttgttatacaagcttattcaatcaatgagaatcatattttccattccatttc |
40280576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 9844723 - 9844638
Alignment:
| Q |
127 |
tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| |||||||||||||||| |
|
|
| T |
9844723 |
tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagtttgtatgacaaataactaacttagaatagtttagt |
9844638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 8e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 127 - 350
Target Start/End: Complemental strand, 25189764 - 25189541
Alignment:
| Q |
127 |
tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttacagagtta |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25189764 |
tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagtttgtatgacaaataactaacttagaatagtttagttagttacagagtta |
25189665 |
T |
|
| Q |
227 |
ttatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatcataatttc |
326 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | | ||||||||||||| ||| |
|
|
| T |
25189664 |
ttatcctatgcttctaggtacatgttagtaagcatgaggttataacaacctataaataactgttgtacaagcaaataccagtaatgagaatcatatcttc |
25189565 |
T |
|
| Q |
327 |
tattccatttcacttttcataata |
350 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
25189564 |
tattccatttcacttttcataata |
25189541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 126 - 337
Target Start/End: Complemental strand, 27488149 - 27487938
Alignment:
| Q |
126 |
gtattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgt-ctgacaagtaactagcttagaatagttt-agttagttaca-ga |
222 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| || || ||||||| |||| ||| ||||||||| ||| | |||||| ||||||||||| || |
|
|
| T |
27488149 |
gtattgcatcacgaagaaaa-cagaaagattgaaacctctaattgtaataacttgcactg-caagtaacttgctcaagttagtttcagttagttacaaga |
27488052 |
T |
|
| Q |
223 |
gttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatcaatgagaatcataa |
322 |
Q |
| |
|
|||||||| |||||||| |||||| |||||| ||||||| ||| | || | | |||||||| ||||||||||||| ||||||||||||| |||| || |
|
|
| T |
27488051 |
gttattattctatgctt-taggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatcaatgaaaatcttat |
27487953 |
T |
|
| Q |
323 |
tttctattccatttc |
337 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
27487952 |
tttccatttcatttc |
27487938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 337
Target Start/End: Complemental strand, 27480712 - 27480586
Alignment:
| Q |
211 |
gttagttac-agagttattatcctatgcttctaggtatatgttagtaagcatgaggttataacaacctataaataacagttgtacaagctaattcaatca |
309 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||| |||||| ||||||| ||| | || | | |||||||| ||||||||||||| ||||||||| |
|
|
| T |
27480712 |
gttagttactagagttattattctatgctt-taggtacatgttaataagcataaggatctagtagcttataaatactagttgtacaagcttattcaatca |
27480614 |
T |
|
| Q |
310 |
atgagaatcataatttctattccatttc |
337 |
Q |
| |
|
|||| |||| || |||| ||| |||||| |
|
|
| T |
27480613 |
atgaaaatcttattttccatttcatttc |
27480586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 23872109 - 23871996
Alignment:
| Q |
169 |
tgtaatagcttgtctgacaagtaactagcttagaatagtttagttagttacagagttattatcctatgcttctaggtatatgttagtaagcatgaggtta |
268 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| |||||||||||||||| ||||| | ||||||| ||||||||| |||||||| |||||| || || |
|
|
| T |
23872109 |
tgtaatagcttgccgtacaagtaactagcttagattagtttagttagttactgagttgtaatcctatacttctaggttcatgttagttagcatgtgggta |
23872010 |
T |
|
| Q |
269 |
taacaacctataaa |
282 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
23872009 |
taacaacttataaa |
23871996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 337
Target Start/End: Complemental strand, 23871629 - 23871580
Alignment:
| Q |
288 |
gttgtacaagctaattcaatcaatgagaatcataatttctattccatttc |
337 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
23871629 |
gttgtacaagcttattcaatcaatgagaatcatattttccattctatttc |
23871580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 163 - 94
Alignment:
| Q |
127 |
tattgcatcacgaagaaaaacagaaagatgaaaatcttaaagtgtaatagcttgtctgacaagtaactag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| ||||||| |
|
|
| T |
163 |
tattgcatcacgaagaaaaacagaaagatgaaaatcctaaagtgtaatagtttgtatgacaaataactag |
94 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 4318375 - 4318421
Alignment:
| Q |
384 |
agagttagttacgattcagttacacattttccgccattgatgcttgag |
431 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4318375 |
agagtttgttacgattcagttacac-ctttccgccattgatgcttgag |
4318421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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