View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_22 (Length: 473)
Name: NF3582_high_22
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_22 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Original strand, 33648258 - 33648712
Alignment:
| Q |
19 |
ctttgactccatctgcaacatcatcgcctacggctggaaccatgtggcagactcagattcagcttcatgctgcagtccctacccttcagatgccgagaag |
118 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33648258 |
ctttgactccatctgcagcatcatcgcctacggctggaaccatgtggcagactcagattcagcttcatgctgcagtccctacccttcagatgccgagaag |
33648357 |
T |
|
| Q |
119 |
cagatttaaaactgcaatgaatgttcgaaataatgctgaatttctcgaacttgaaaatcgccttacaggtcttccatctccttcaaataggcttgcagga |
218 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33648358 |
cagatttaaaactgcaatgaatgtcagaaataatgctgaatttctcaaacttgaaaatcgccttacaggtcttccatctccttcaaataggcttgcagga |
33648457 |
T |
|
| Q |
219 |
gtgaatcctactaaccttgaaaacatttttgggtcatcaatacaatctccgacatcaatacaggtgcatcagagcacaaaccagcaactttggggcaatc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33648458 |
gtgaatcctactaaccttgaaaacatttttgggtcatcaatacaatctccgacatcaatacaggtgcatcagagcacaaaccagcaactttggggcaatc |
33648557 |
T |
|
| Q |
319 |
cttttgatcttaccaattcaaacgtgattggatcatcacaatttagagttgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcgtggc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33648558 |
cttttgatcttaccaattcaaacgtgattggatcatcacaatttagagttgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcatggc |
33648657 |
T |
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| Q |
419 |
gagctttaattccgagcttccttctgctagctcagttgccatggaaccttctgcc |
473 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33648658 |
gagatttaattccgagcttccttctgctagctcagttgccatggaaccttctgcc |
33648712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 321 - 470
Target Start/End: Complemental strand, 36224664 - 36224519
Alignment:
| Q |
321 |
tttgatcttaccaattcaaacgtgattggatcatcacaatttagagttgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcgtggcga |
420 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||| |||||| ||| || | |
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| T |
36224664 |
tttggtcttaccaattcaaatgtgattggatcatcacag----gagttgatgccttttcaaagcggagacaaagctttattgagcgcagcaacgttgcaa |
36224569 |
T |
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| Q |
421 |
gctttaattccgagcttccttctgctagctcagttgccatggaaccttct |
470 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36224568 |
gccttaattccgagcttccttctgctagctcagttgccatggaaccttct |
36224519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 37 - 470
Target Start/End: Original strand, 25813074 - 25813504
Alignment:
| Q |
37 |
catcatcgcctacggctggaaccatgtggcagactcagattcagcttcatgctgcagtccctacccttcagatgccgagaagcagatttaaaactgcaat |
136 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| | | |
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| T |
25813074 |
catcatcgcctgctactggaaccatgtggcagactcagattcagcttcatgctgcagtcccaacccttcagatgccgagaaacagattgaaaactgtact |
25813173 |
T |
|
| Q |
137 |
gaatgttcgaaataatgctgaatttctcgaacttgaaaatcgccttacaggtcttccatctccttcaaataggcttgcaggagtgaatcctactaacctt |
236 |
Q |
| |
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||||| | ||||||| ||||||||||||||||| |||||||| | ||||| |||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
25813174 |
gaatgctggaaataacatagaatttctcgaacttgagaatcgcctca---gtctttcatccccttcaaataggcttgcaagagtgaatcctactaacctt |
25813270 |
T |
|
| Q |
237 |
gaaaacatttttgggtcatcaatacaatctccgacatcaatacaggtgcatcagagcacaaaccagcaactttggggcaatccttttgatcttaccaatt |
336 |
Q |
| |
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|||||| |||| |||||||| |||||||||||||| |||| ||| ||||||||| | ||||| ||| ||| ||| || ||| || |||||||||||||| |
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| T |
25813271 |
gaaaactttttcgggtcatcgatacaatctccgaccacaatgcagatgcatcagaacgcaaactagccactctggtgctatcattctgatcttaccaatt |
25813370 |
T |
|
| Q |
337 |
caaacgtgattggatcatcacaatttagagttgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcgtggcgagctttaattccgagct |
436 |
Q |
| |
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||| || ||||| ||| ||||| ||||| |||||||| || |||| ||||| |||||||| ||| ||| ||| |||||||||||| ||| || || |
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| T |
25813371 |
gaaatgttattggctcactccaattcagagtagatgccttctcaaagcaaagccagagctttatcgagcgcactagcatggcgagctttagttctgatct |
25813470 |
T |
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| Q |
437 |
tccttctgctagctcagttgccatggaaccttct |
470 |
Q |
| |
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||||||||||| ||||||||||||||| |||||| |
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| T |
25813471 |
tccttctgctacctcagttgccatggagccttct |
25813504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 430
Target Start/End: Original strand, 25818730 - 25819135
Alignment:
| Q |
22 |
tgactccatctgcaacatcatcgcctacggctggaaccatgtggcagactcagattcagcttcatgctgcagtccctacccttcagatgccgagaagcag |
121 |
Q |
| |
|
|||||||||| |||||| ||| || | |||||||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||| | ||| || |
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| T |
25818730 |
tgactccatcggcaacaacattgcttgtggctggaaccatgtggaagactcgtattcagcttcatgttgcagtccctaccctccagatgccaataagtag |
25818829 |
T |
|
| Q |
122 |
atttaaaactgcaatgaatgttcgaaataatgctgaatttctcgaacttgaaaatcgccttacaggtcttccatctccttcaaataggcttgcaggagtg |
221 |
Q |
| |
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|||||| |||||| |||||| | ||||| | | |||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||| |
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| T |
25818830 |
atttaatactgcactgaatgctagaaatgacgttgaatttctcgaacttaaaaatcacctta---gtcttcaatctccttcaaataggcttgcaggagtg |
25818926 |
T |
|
| Q |
222 |
aatcctactaaccttgaaaacatttttgggtcatcaatacaatctccgacatcaatacaggtgcatcagagcacaaaccagcaactttggggcaatcctt |
321 |
Q |
| |
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||||||||||||||||||||| |||| |||||| |||| |||||||| ||||| ||||||||||||| | ||||||||||||||||||| |||||| |
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| T |
25818927 |
aatcctactaaccttgaaaactttttcgggtcagtgttacattctccgacctcaatgcaggtgcatcagaacgcaaaccagcaactttggggatatcctt |
25819026 |
T |
|
| Q |
322 |
ttgatcttaccaattcaaacgtgattggatcatcacaatttagagttgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcgtggcgag |
421 |
Q |
| |
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| ||||| ||||||| || |||| |||||| ||||||| || |||||||||||||||||||| ||||| |||||||||||||||| ||| || ||| |
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| T |
25819027 |
ctaatctttccaattccaatgtgagtggatcgccacaattcagggttgatgccttttcgaagcggagccatagctttattgagtgcaatagcagggtgag |
25819126 |
T |
|
| Q |
422 |
ctttaattc |
430 |
Q |
| |
|
||||||||| |
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|
| T |
25819127 |
ctttaattc |
25819135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 368 - 470
Target Start/End: Original strand, 25822472 - 25822574
Alignment:
| Q |
368 |
tgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcgtggcgagctttaattccgagcttccttctgctagctcagttgccatggaacct |
467 |
Q |
| |
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|||||||||||| || || ||||| |||||| | ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| | |||||| |
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| T |
25822472 |
tgatgccttttcaaatcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaacct |
25822571 |
T |
|
| Q |
468 |
tct |
470 |
Q |
| |
|
||| |
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|
| T |
25822572 |
tct |
25822574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 25822281 - 25822346
Alignment:
| Q |
201 |
tcaaataggcttgcaggagtgaatcctactaaccttgaaaacatttttgggtcatcaatacaatct |
266 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
25822281 |
tcaaatagacttgcaggagtgaatcctactaaccatgaagacatttttgggtcatcgatacaatct |
25822346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 25816482 - 25816572
Alignment:
| Q |
201 |
tcaaataggcttgcaggagtgaatcctactaaccttgaaaacatttttgggtcatcaatacaatctccgacatcaatacaggtgcatcaga |
291 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |||| |||| | |||||| |
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| T |
25816482 |
tcaagtaggcttgctggagtgaatcctactaaccttgaaggctattttgggtcatcgatacaatctccgacagcaatgcaggggtatcaga |
25816572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 25822122 - 25822202
Alignment:
| Q |
54 |
ggaaccatgtggcagactcagattcagcttcatgctgcagtccctacccttcagatgccgagaagcagatttaaaactgca |
134 |
Q |
| |
|
||||||||||||||||||| || || | ||||| || |||||||||| ||||||||| |||| | |||||| ||| ||||| |
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|
| T |
25822122 |
ggaaccatgtggcagactccgactcggattcatactacagtccctacacttcagatgtcgagcaacagattgaaagctgca |
25822202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 431
Target Start/End: Original strand, 25816673 - 25816736
Alignment:
| Q |
368 |
tgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcgtggcgagctttaattcc |
431 |
Q |
| |
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||||||| ||||||||| ||||| | |||||| ||| |||||||| ||||||||||||||||| |
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| T |
25816673 |
tgatgccctttcgaagcagagccagaactttatcgagagcagcagcatggcgagctttaattcc |
25816736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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