View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_26 (Length: 462)
Name: NF3582_high_26
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 445
Target Start/End: Complemental strand, 22427236 - 22426826
Alignment:
| Q |
29 |
gattcaaccatccaaacaaacgatcctgtagacaatgaaatgggaaggtatgaagcatatgtcattttcgacggtccaatgaaagacatctacagacaat |
128 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
22427236 |
gattcaaccatccaaacaagcgatcacgtagacaatgaaatgggaaagtttgaagcatatgtcattttcgacggtccaatgaaagacatctatagaaaat |
22427137 |
T |
|
| Q |
129 |
aatgggcaattgcaaaacaacatatcattggcaagaatgtacgccacaaatgctacaagacaatgaaagaagctgaacatgaattttacggttcatacaa |
228 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
22427136 |
---gggcaattgcaaaacaacatatcattgacaagaatgtacaccacaaaggctacaagacaatgtaagaagctaaacatgaattttacggttcatacaa |
22427040 |
T |
|
| Q |
229 |
agaggttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaacatcaaaagaat |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
22427039 |
agaggttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgacaaaatccgtcagctcgaacatcaaaagaat |
22426940 |
T |
|
| Q |
329 |
ttccaaataactaatctaacttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaataattcaccactgaatgcttctacccaa |
428 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22426939 |
ttccaaataactaatctaacttatatgg---agtttagtctcagatggaaattgataaacaactatgtagaataattcaccactgaatgcttctacctaa |
22426843 |
T |
|
| Q |
429 |
tcaacagatctagttgt |
445 |
Q |
| |
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||||||||| ||||||| |
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| T |
22426842 |
tcaacagatttagttgt |
22426826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 31 - 431
Target Start/End: Original strand, 41616280 - 41616674
Alignment:
| Q |
31 |
ttcaaccatccaaacaaacgatcctgtagacaatgaaatgggaaggtatgaagcatatgtcattttcgacggtccaatgaaagacatctacagacaataa |
130 |
Q |
| |
|
|||||||||||||| || ||||| ||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||| | |||||||||| ||| |
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| T |
41616280 |
ttcaaccatccaaataagcgatctcgtagataatgatatgggaaagtttgaagcatatgtcattttcgacggtccaatgaagggcatctacagaaaat-- |
41616377 |
T |
|
| Q |
131 |
tgggcaattgcaaaacaacatatcattggcaagaatgtacgccacaaatgctacaagacaatgaaagaagctgaacatgaattttacggttcatacaaag |
230 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||| | || ||||||||||||||| |
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| T |
41616378 |
-gggcaattgcaaaacaacatatcatcggtaagaatgtacgccacaaaggctacaagacgatgaaagaagctgaacatgcacttgacggttcatacaaag |
41616476 |
T |
|
| Q |
231 |
aggttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaacatcaaaagaattt |
330 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
41616477 |
aggttacaatagcgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatgtcaattgacaaaatccgtcagctcgaacatcaaaagaattt |
41616576 |
T |
|
| Q |
331 |
ccaaataactaatctaacttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaataattcaccactgaatgcttctacccaatc |
430 |
Q |
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|||||||||| ||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41616577 |
ccaaataactgatccaacttatatgg---agtttagtctcagatggaaatagataaacaactatgtagaagaattcaccactgaatgcttctacccaatc |
41616673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 31 - 431
Target Start/End: Original strand, 2620110 - 2620504
Alignment:
| Q |
31 |
ttcaaccatccaaacaaacgatcctgtagacaatgaaatgggaaggtatgaagcatatgtcattttcgacggtccaatgaaagacatctacagacaataa |
130 |
Q |
| |
|
|||||||||||||| || ||||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| | |||||||||| ||| |
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| T |
2620110 |
ttcaaccatccaaataagcgatctcgtagataatgaaatgggaaagtttgaagcatatgtcattttcgacggtccaatgaagggcatctacagaaaat-- |
2620207 |
T |
|
| Q |
131 |
tgggcaattgcaaaacaacatatcattggcaagaatgtacgccacaaatgctacaagacaatgaaagaagctgaacatgaattttacggttcatacaaag |
230 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||||||| |||||||||||||||||||||||||||| | | ||||| |||||||||||| |
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|
| T |
2620208 |
-gggcaattgcaaaacaacatgtcatcggtaagaatgtacgccacaaaggctacaagacaatgaaagaagctgaacaggcactttacagttcatacaaag |
2620306 |
T |
|
| Q |
231 |
aggttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaacatcaaaagaattt |
330 |
Q |
| |
|
||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
2620307 |
aggttacaatagcaaaaaacctccaaagatctccaacaatggagtctaaaaagaagatgtcaattgacaaaatccgtcaggtcgaacatcaaaagaattt |
2620406 |
T |
|
| Q |
331 |
ccaaataactaatctaacttatatggatcagtttagtctcagatggaaatggataaacaactatgtagaataattcaccactgaatgcttctacccaatc |
430 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2620407 |
ccaaataactgatcaaacttatatgg---agtttagtctcagatggaaatggataaacaactatgtagaagaattcaccactgaatgcttctacccaatc |
2620503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 31 - 318
Target Start/End: Original strand, 4716596 - 4716880
Alignment:
| Q |
31 |
ttcaaccatccaaacaaacgatcctgtagacaatgaaatgggaaggtatgaagcatatgtcattttcgacggtccaatgaaagacatctacagacaataa |
130 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||||| || ||||||||||||||| || |||||||||||||| | |||||||||| ||| |
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| T |
4716596 |
ttcaaccatccaaataagcgatctcgtagacaatgaaatgggaatgtttgaagcatatgtcatatttgacggtccaatgaagggcatctacagaaaat-- |
4716693 |
T |
|
| Q |
131 |
tgggcaattgcaaaacaacatatcattggcaagaatgtacgccacaaatgctacaagacaatgaaagaagctgaacatgaattttacggttcatacaaag |
230 |
Q |
| |
|
||||||||||||| ||||||||||| | ||| || |||||||| ||| |||||||||||||||||||||||||| | | | ||||| |||||||||||| |
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| T |
4716694 |
-gggcaattgcaaagcaacatatcatcgacaacaaggtacgccataaaggctacaagacaatgaaagaagctgaataggcactttacagttcatacaaag |
4716792 |
T |
|
| Q |
231 |
aggttacaacaacgaaaaacctccaaagatctccaacaatggagtctaaaaagaagatttcaattgccaaaatctgtcagctcgaaca |
318 |
Q |
| |
|
||||||||||| ||||||| || || ||||||||||||||||| |||| ||||||||| ||||||| |||||| ||||||||||||| |
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|
| T |
4716793 |
aggttacaacagcgaaaaatctacatagatctccaacaatggaatctagaaagaagatgtcaattgacaaaattcgtcagctcgaaca |
4716880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 4716877 - 4716921
Alignment:
| Q |
386 |
aacaactatgtagaataattcaccactgaatgcttctacccaatc |
430 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||| |
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|
| T |
4716877 |
aacaactatgtagaagaattcaccactgaatgtttctacccaatc |
4716921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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