View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_high_28 (Length: 460)
Name: NF3582_high_28
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 36 - 435
Target Start/End: Original strand, 6148916 - 6149315
Alignment:
| Q |
36 |
caaacaaaccttgaacataatatacttagaggaaaacagaagggtgtatgtggggtgcgaagttaaagccctaaaaatattttgtctatttaaatttcct |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6148916 |
caaacaaaccttgaacataatatacttagaggaaaacagaagggtgtatgtggggtgtgaagttaaagccctaaaaatattttgtctatttaaatttcct |
6149015 |
T |
|
| Q |
136 |
ttttacatattttctttccaagtagaacgagataagaacaaaggtacgagttaagttaggcaaacccttaattaaaataaattttgttaaagtattaatt |
235 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6149016 |
ttttacattttttctttctaagtagaacgagataagaacaaaggtacgagttaagttagacaaacccttaattaaaataaattttgttaaagtattaatt |
6149115 |
T |
|
| Q |
236 |
acccgtctcttctttctttactcttaaaatgcgggtctcatttaaaaatgaaacttttactcttcacaaattcatactctatttatttttatatcacgtc |
335 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6149116 |
acccgtctcttttttctttactcttaaaatgcgggtctcatttaaaaatgaaacttttactcttcacaaattcatactctatttatttttatatcacgtc |
6149215 |
T |
|
| Q |
336 |
agttagttttcttcgcaaacagatgtaactgatgatgatacatgatactgataaaaatatatggaatcatttttattgacaagaaaatttttatgtatat |
435 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6149216 |
agttagttttctttgcaaacagatgtaactgatggtgatacatgatactgataaaaatatatggaatcatttttattgacaagaaattttttatgtatat |
6149315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University