View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_29 (Length: 455)
Name: NF3582_high_29
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 9654834 - 9655266
Alignment:
| Q |
1 |
agaacactttcgctgttttgcttcgagcatgtgccaaccgtgaactttggagtgttggtttgcagattcatggcttgcttgttcggtgtgggcttgagag |
100 |
Q |
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| T |
9654834 |
agaacactttcgctgttttgcttcgagcatgtaccaaccgtgaactttggagtgttggtttgcagattcatggcttgcttgttcggtgtgggcttgagag |
9654933 |
T |
|
| Q |
101 |
agaaaaatttgcagggagttctcttgtgtatatgtacttgaaaggtggcgatgatttgagggatgcgttacgtgttttttatggattgttggagagagat |
200 |
Q |
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| T |
9654934 |
agaaaaatttgctgggagttctcttgtgtatatgtacttgaaaggtggcgatgatttgagggatgcgttacgtgttttttatggattgttggagagagat |
9655033 |
T |
|
| Q |
201 |
gttgttgcttggaatgttatgatttctgggtttgctcaaaatggtgattttcgcatggtgcaaaggttgttttctgaaatgtgggaagagcaagggttaa |
300 |
Q |
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| T |
9655034 |
gttgttgcttggaatgttatgatttctgggtttgctcaaaatggtgattttcgcatggtgcaaaggttgttttctgaaatgtgggaagagcaagggttga |
9655133 |
T |
|
| Q |
301 |
aacctgatagaatcacctttgctagtttactcaagtgttgttctgtgttgaacgaggtaatgcaaattcatgggattgtgtataagtttggtgctgaagt |
400 |
Q |
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| T |
9655134 |
aacctgatagaatcacctttgctagtttactcaagtgttgttctgtgttgaacgaggtaatgcaaattcatgggattgtgtataagtttggtgctgaagt |
9655233 |
T |
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| Q |
401 |
tgatgttgtggttgagagtgctatggttgactt |
433 |
Q |
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| T |
9655234 |
tgatgttgtggttgagagtgctatggttgactt |
9655266 |
T |
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