View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_3 (Length: 766)
Name: NF3582_high_3
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 50 - 474
Target Start/End: Complemental strand, 13280395 - 13279974
Alignment:
| Q |
50 |
caattcttaattggaattgaagcaaacaacatgtagaaggggtgtttatggaaagatgttaaacattcaagggctatcaacatgcttgatgagattgagc |
149 |
Q |
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| T |
13280395 |
caattcttaattggaattgaagcaaacaacatgtagaaggggtgtc-atggaaagatgttaaacattcaagggctatcaacatgcttgatgagattgagc |
13280297 |
T |
|
| Q |
150 |
aaggaatgttgagtcgatcagcttagagaggcggatgcattaacattcattgatcggtctagagacgaaatggcaagaaaactcaaggttaaatggagag |
249 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13280296 |
aaggaatgttgagttgatcagcttaaagaggcggatgcattaacattcattgatcggtctagagacgaaatggcaagaaaactcaaggttaaatggagag |
13280197 |
T |
|
| Q |
250 |
gcgcatgcggtggcggattttgagttattttgttgggtatcaaacttttatgaaatatatattaaactgtttcaaaaattagagaaaagtattaagtggc |
349 |
Q |
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| T |
13280196 |
gcgtatgcagtggcggattttgagttattttgttgggtaccaaacttttatgaaatatatattaaactgtttcaaaaattagggaaaagtattaagtggc |
13280097 |
T |
|
| Q |
350 |
ccacagtgattaaatttgcttgaaagcagaatggtggttgcaagtttgaatccccaacaactaagaattcttaatcataatatgcctaatgttgtatata |
449 |
Q |
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| T |
13280096 |
c--cagtgattaaatttgcttgaaaacagaatggtagttgcaagttcgaatccccaacaactaagaattattaatcataatatgcctaatgttgtatata |
13279999 |
T |
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| Q |
450 |
tagaaaacttgggggtcccatgttt |
474 |
Q |
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| T |
13279998 |
tagaaaacttgcgggtgccatgttt |
13279974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 527 - 749
Target Start/End: Complemental strand, 13276683 - 13276458
Alignment:
| Q |
527 |
ttacaaggtaaaaggcataatg----tacacatttgaaaattaaagtggagaaaacttaacacagggtgtagtcttccactggtgggactagaaagagac |
622 |
Q |
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| T |
13276683 |
ttacaaggtaaaaggcataatggatgtacatatttataagttaaggtggagaaagcttaacatagagtg-agtcttccactagtgggactagaaagagac |
13276585 |
T |
|
| Q |
623 |
taccaatggtagcnnnnnnntggtacaattagggagcccttttgtgttatgctttaggcgagagcaagaaattctttaagaggacggaatgcgttctagg |
722 |
Q |
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||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
13276584 |
taccaatggtagcaaaaaaatggtacaattagggagtccttctgtgttatgctttaggcgagagcaagaaattctttaagaggacgaaatgtgttctagg |
13276485 |
T |
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| Q |
723 |
ggttaaaggaggtatgaaacaacttat |
749 |
Q |
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| T |
13276484 |
ggttaaaggaggtatgaaacaacttat |
13276458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 477 - 519
Target Start/End: Complemental strand, 13279951 - 13279909
Alignment:
| Q |
477 |
tgccaccagacgcatgcaagaatactcatgagcaacctgagag |
519 |
Q |
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| T |
13279951 |
tgccaccagacgcatgcaagaatactcataagcaacctgagag |
13279909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 32786611 - 32786676
Alignment:
| Q |
260 |
tggcggattttgagttattttgtt-gggtatcaaacttttatgaaatatatattaaactgtttcaa |
324 |
Q |
| |
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| T |
32786611 |
tggcggatcttgagttaatttgttagggtgtcaaacttctatggaatatatattaaacggtttcaa |
32786676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 2753737 - 2753673
Alignment:
| Q |
259 |
gtggcggattttgagttattttgttggg--tatcaaacttttatgaaatatatattaaactgttt |
321 |
Q |
| |
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| T |
2753737 |
gtggcggatcttgagttattttcttgggggtaccaaaagtttatgaaatatatattaagctgttt |
2753673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 6891380 - 6891308
Alignment:
| Q |
259 |
gtggcggattttgagttattttgttggg-tatcaaacttttatgaaatatatattaaactgtttcaaaaatta |
330 |
Q |
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| T |
6891380 |
gtggcggatcttgagttattttctcggggtaccaaaattctatgaaatatatattaagctgtttgaaaaatta |
6891308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 43616038 - 43615981
Alignment:
| Q |
259 |
gtggcggattttgagttattttgttggg--tatcaaacttttatgaaatatatattaa |
314 |
Q |
| |
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||||||||| |||||||| ||||||||| | ||||||||||||| |||||||||||| |
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| T |
43616038 |
gtggcggatcttgagttaatttgttgggggtgtcaaacttttatggaatatatattaa |
43615981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 171233 - 171161
Alignment:
| Q |
259 |
gtggcggattttgagttattttgttggg-tatcaaacttttatgaaatatatattaaactgtttcaaaaatta |
330 |
Q |
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| T |
171233 |
gtggcggatcttgagttaatttgttgggatgccaaacctttatggaatatatattaaattgtttcaaatatta |
171161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 19362762 - 19362705
Alignment:
| Q |
259 |
gtggcggattttgagttattttgtt--gggtatcaaacttttatgaaatatatattaa |
314 |
Q |
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| T |
19362762 |
gtggcggatcttgagttattttgttgggggtgccaaacttttatggaatatatattaa |
19362705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 259 - 321
Target Start/End: Original strand, 42755733 - 42755795
Alignment:
| Q |
259 |
gtggcggattttgagttattttgttgggtatcaaacttttatgaaatatatattaaactgttt |
321 |
Q |
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||||||||| |||||||||||| |||| || |||| || ||| |||||||||||| ||||||| |
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|
| T |
42755733 |
gtggcggatcttgagttatttttttggataccaaaattatataaaatatatattatactgttt |
42755795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 4306880 - 4306952
Alignment:
| Q |
260 |
tggcggattttgagttattttgttggg--tatcaaacttttatgaaatatatattaaactgtttcaaaaatta |
330 |
Q |
| |
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|||||||| |||||||||||| | ||| || |||| || |||||||||||||||||||||||| ||| |||| |
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| T |
4306880 |
tggcggatcttgagttattttctcgggggtaccaaaattctatgaaatatatattaaactgtttgaaagatta |
4306952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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