View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_30 (Length: 445)
Name: NF3582_high_30
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 5073650 - 5073242
Alignment:
| Q |
19 |
ttaagagctgatatggatgctctttctatgcaggttcattatgctagtccttgaactattgctctcttcaatttagtttttaaagtatatgaaatcgtta |
118 |
Q |
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| T |
5073650 |
ttaagagctgatatggatgctctttctatgcaggttcattatgctagtccttaaactattgctctcttcaatttagtttttaaagtatatgaaatcgtta |
5073551 |
T |
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| Q |
119 |
atttcatctctaaagtatatgaaaaatccgtcaattttgttggtaacatcttaatagtaacatttaatagcagcgactaaattgtctgagtttgtatact |
218 |
Q |
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| T |
5073550 |
atttcgtctctgaagtatatgaaaaatccgtcaattttgttggtgacatcttaatagtaacatttaatagcagcgactaaattgtctgagtttgtatact |
5073451 |
T |
|
| Q |
219 |
ttatgtactacttttaagaactaaaatgttttattcattagcgtgagacatccttacaaatcactttctataaactctatttagaccttatctctttttc |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5073450 |
-----tactac-tttaagaactaaaatgttttattcattagcgtgagacatccttacaaatcactttctataaactctatttagaccttatctctttttc |
5073357 |
T |
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| Q |
319 |
aca-nnnnnnncttcttctaataaactacttgattttctttttgcacgataaatgttagtaattagttcttcgtaatgttaatgttaggggagagttcga |
417 |
Q |
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| T |
5073356 |
acattttttttcttcttctaataaactacttgattttctttttgcacgataaatgttagtaattagttcttcgtaatgttaatgttaggggagagttcga |
5073257 |
T |
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| Q |
418 |
atccatgtcgcctct |
432 |
Q |
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| T |
5073256 |
atccatgtcgcctct |
5073242 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 2055513 - 2055591
Alignment:
| Q |
99 |
taaagtatatgaaatcgtt-aatttcatctctaaagtatatgaaaaatccgtcaattttgttggtaacatcttaatagt |
176 |
Q |
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| T |
2055513 |
taaagtatatgaaatcggtcaatttagtctctaaagtatatgaaaaattggtcaatttagtccttcacatcttaatagt |
2055591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 5099561 - 5099500
Alignment:
| Q |
83 |
tcttcaatttagtttttaaagtatatgaaat-cgttaatttcatctctaaagtatatgaaaa |
143 |
Q |
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| T |
5099561 |
tcttaaatttagtctttaaactatatgaaatccgttaatttagtccctaaagtatatgaaaa |
5099500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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