View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_high_31 (Length: 444)

Name: NF3582_high_31
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_high_31
NF3582_high_31
[»] chr3 (14 HSPs)
chr3 (221-427)||(3701696-3701900)
chr3 (45-183)||(3701904-3702042)
chr3 (277-427)||(3712996-3713146)
chr3 (284-427)||(3705446-3705589)
chr3 (283-427)||(3719515-3719661)
chr3 (277-427)||(3707955-3708102)
chr3 (7-75)||(3702043-3702110)
chr3 (379-427)||(26807448-26807496)
chr3 (379-427)||(32775296-32775344)
chr3 (379-427)||(32814982-32815030)
chr3 (13-99)||(3713443-3713529)
chr3 (149-198)||(3713301-3713350)
chr3 (310-403)||(3716456-3716549)
chr3 (380-427)||(32772717-32772764)
[»] chr8 (8 HSPs)
chr8 (277-427)||(12482994-12483145)
chr8 (310-427)||(2105890-2106006)
chr8 (285-427)||(12289420-12289563)
chr8 (277-427)||(11949326-11949476)
chr8 (380-427)||(12670511-12670558)
chr8 (381-427)||(939435-939481)
chr8 (331-427)||(12482728-12482825)
chr8 (377-418)||(11949182-11949223)
[»] chr5 (4 HSPs)
chr5 (310-427)||(38327799-38327914)
chr5 (318-427)||(38322627-38322733)
chr5 (380-427)||(31965398-31965445)
chr5 (381-427)||(8219760-8219806)
[»] chr7 (1 HSPs)
chr7 (377-427)||(25796198-25796248)
[»] chr4 (4 HSPs)
chr4 (377-427)||(19186017-19186067)
chr4 (381-427)||(26741372-26741418)
chr4 (381-427)||(30161860-30161906)
chr4 (381-427)||(51386264-51386310)
[»] chr1 (3 HSPs)
chr1 (310-427)||(43848981-43849094)
chr1 (380-427)||(30953117-30953164)
chr1 (381-427)||(27981075-27981121)
[»] chr6 (2 HSPs)
chr6 (381-427)||(21882933-21882979)
chr6 (7-100)||(3520707-3520800)
[»] chr2 (2 HSPs)
chr2 (381-427)||(4767493-4767539)
chr2 (381-427)||(38551354-38551400)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 221 - 427
Target Start/End: Complemental strand, 3701900 - 3701696
Alignment:
Q  221 aattcaacagaattaacaataatatacaacnnnnnnntacactacttgaaatttgcaaaaataaaaagaaggagctcaggggtatggtattcatccaatg 320  Q
    ||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  3701900 aattcaacagaattaacaataatatacaacaaaaaaatacacgacttgaaatttgcaaaaataaaaa--aggagctcaggggtatggtattcatccaatg 3701803  T
Q  321 tttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgcaccagccgggaatcgaacccaggtctgtaccgtggca 420  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||||||||| ||||||||||||||||    
T  3701802 tttcaggagaagtgatgttaccgaacaccacagatattatcatcatagctccctcaaatttgcaccagccgggaatcgaacccgggtctgtaccgtggca 3701703  T
Q  421 gggtact 427  Q
    |||||||    
T  3701702 gggtact 3701696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 3702042 - 3701904
Alignment:
Q  45 gtagctcatgaaccttaaaaccaaggagcactctagtcctggcatatcctctatacataccattcctgcgacgaagccatttccaccatgcacaagggat 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3702042 gtagctcatgaaccttaaaaccaaggagcactctagtcctggcatatcctctatacataccattgctgcgacgaagccatttccaccatgcacaagggat 3701943  T
Q  145 gactcgaaaacaggacatgctccttcttttgaacagtta 183  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  3701942 gactcgaaaacaggacatgcttcttcttttgaacagtta 3701904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 277 - 427
Target Start/End: Complemental strand, 3713146 - 3712996
Alignment:
Q  277 aaaaataaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcg 376  Q
    |||||||||||||| |||||||| || ||  | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3713146 aaaaataaaaagaaagagctcagaggcattattttcatccaatgtttcaggagaagtgatgttaccgaacaccacagatattatcatcatagctccctcg 3713047  T
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    |   ||||||||||||||||||||||| |||||||||||||||||||||||    
T  3713046 aatatgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 3712996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 284 - 427
Target Start/End: Complemental strand, 3705589 - 3705446
Alignment:
Q  284 aaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgc 383  Q
    ||||||| |||||||| |||||  | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||    
T  3705589 aaaagaaagagctcagaggtattattttcatccaatgtttcaggagaagtgatgttaccgaacaacacatatattatcatcatagctccctcaaaattgc 3705490  T
Q  384 accagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  3705489 accagccgggaatcgaacccgggtctgtaccgtggcagggtact 3705446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 283 - 427
Target Start/End: Complemental strand, 3719661 - 3719515
Alignment:
Q  283 aaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgtt-accgaa-caccacaaatattatcatcatagctccctcgatat 380  Q
    ||||||| ||||||||| |||||| | ||||||| |||||||||||| | ||||||| |||||| ||| |||||| || |||||||||||||||  | ||    
T  3719661 aaaaagatggagctcagaggtatgtttttcatcctatgtttcaggaggaatgatgtttaccgaaacacaacaaatgttttcatcatagctccctgcaaat 3719562  T
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  3719561 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 3719515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 277 - 427
Target Start/End: Complemental strand, 3708102 - 3707955
Alignment:
Q  277 aaaaataaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcg 376  Q
    ||||| ||||| ||||||||||| |||||  | ||||||| ||| ||||||| | || |||||||| |||| |||||||||| |||||| ||| ||        
T  3708102 aaaaaaaaaaaaaaggagctcagaggtattattttcatccgatgattcaggaaaggtaatgttaccaaacatcacaaatattttcatcacagcccca--- 3708006  T
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3708005 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 3707955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 3702110 - 3702043
Alignment:
Q  7 tcgaagaatatgcaaaacactaggatcgccacataaatgtagctcatgaaccttaaaaccaaggagcac 75  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3702110 tcgaacaatatgcaaaacactaggatcgccacataaatgtagctcatgaacctt-aaaccaaggagcac 3702043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 26807448 - 26807496
Alignment:
Q  379 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26807448 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 26807496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 32775344 - 32775296
Alignment:
Q  379 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32775344 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 32775296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 32815030 - 32814982
Alignment:
Q  379 attgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32815030 attgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 32814982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 3713529 - 3713443
Alignment:
Q  13 aatatgcaaaacactaggatcgccacataaatgtagctcatgaaccttaaaaccaaggagcactctagtcctggcatatcctctata 99  Q
    ||||||||||||||||||||| || |||||||||||||||| | |||| ||||||| ||| |||||||| | |||||| || |||||    
T  3713529 aatatgcaaaacactaggatcaccgcataaatgtagctcatcatcctttaaaccaatgagtactctagtacaggcatacccactata 3713443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 3713350 - 3713301
Alignment:
Q  149 cgaaaacaggacatgctccttcttttgaacagttaacagacttcaataaa 198  Q
    ||||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  3713350 cgaaaacaggacatgcttcttcttttgaccagttaacggacttcaataaa 3713301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 3716549 - 3716456
Alignment:
Q  310 ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgcaccagccgggaatcgaaccc 403  Q
    |||||||||| |||||||| |||||||||||||||| | || || |||| | |||| | |||||| ||  |||||||||| |||||||||||||    
T  3716549 ttcatccaatttttcaggacaagtgatgttaccgaaaatcagaattatttttatcacaactccctagaatttgcaccagctgggaatcgaaccc 3716456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 427
Target Start/End: Complemental strand, 32772764 - 32772717
Alignment:
Q  380 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||| ||||| |||||| |||||| ||||||||||||||||||||||    
T  32772764 ttgcagcagccaggaatcaaacccaagtctgtaccgtggcagggtact 32772717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 277 - 427
Target Start/End: Original strand, 12482994 - 12483145
Alignment:
Q  277 aaaaataaaaagaaggagctcaggggtatggtat-tcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctc 375  Q
    ||||| |||||||||||||||||||||||  ||| ||||||| | |||||||| ||||||||||||| |||| |||| || | |||||||||||||| ||    
T  12482994 aaaaaaaaaaagaaggagctcaggggtata-tatgtcatccagtatttcaggataagtgatgttacctaacatcacagatgtcatcatcatagctccatc 12483092  T
Q  376 -gatattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
     ||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  12483093 tgaagttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 12483145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 2106006 - 2105890
Alignment:
Q  310 ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatat-tgcaccagccgggaatcgaacccaggtc 408  Q
    ||||||||||| ||||||| | |||||||||||||||| |||||||||| ||||||||||  |||| | |  ||||||||||||||||||||||| ||||    
T  2106006 ttcatccaatggttcaggataggtgatgttaccgaacatcacaaatattttcatcatagc--cctccacaggtgcaccagccgggaatcgaacccgggtc 2105909  T
Q  409 tgtaccgtggcagggtact 427  Q
    |||||||||||||||||||    
T  2105908 tgtaccgtggcagggtact 2105890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 285 - 427
Target Start/End: Complemental strand, 12289563 - 12289420
Alignment:
Q  285 aaagaaggagctcaggggtatggtat-tcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctc--gatatt 381  Q
    ||||||||||||||||||| |  ||| ||||||| | ||| |||| | ||||||||||| ||||||||||| ||||||||||| ||||| ||  || |||    
T  12289563 aaagaaggagctcaggggtgta-tatgtcatccattatttgaggataggtgatgttacccaacaccacaaacattatcatcattgctccttcacga-att 12289466  T
Q  382 gcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  12289465 gcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 12289420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 277 - 427
Target Start/End: Original strand, 11949326 - 11949476
Alignment:
Q  277 aaaaataaaaagaaggagctcaggggtatggtattcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcg 376  Q
    ||||| ||| ||||||||||||| |||||  |  ||||| | | |||||||| | | ||||||||| ||||||||||| ||||||||||||||||  ||     
T  11949326 aaaaaaaaacagaaggagctcagaggtatatttatcatcaagtttttcaggatagg-gatgttacccaacaccacaaacattatcatcatagctcattca 11949424  T
Q  377 ata-ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    |   ||||||||||| ||||| |||||| |||||||| ||||||||||||||    
T  11949425 agggttgcaccagccaggaattgaacccgggtctgtagcgtggcagggtact 11949476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 12670511 - 12670558
Alignment:
Q  380 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  12670511 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 12670558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 939435 - 939481
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  939435 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 939481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 427
Target Start/End: Original strand, 12482728 - 12482825
Alignment:
Q  331 agtgatgttaccgaacaccacaaatattatcatcatagctccctc-gatattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    |||||||||||| |||||||||   ||||||||||||||||  || |   ||||||||||| ||||| |||||| |||||||||| ||||||||||||    
T  12482728 agtgatgttacccaacaccacatgcattatcatcatagctcattcaggggttgcaccagccaggaattgaacccgggtctgtaccatggcagggtact 12482825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 11949182 - 11949223
Alignment:
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtgg 418  Q
    |||||||||||||||||||| |||||| |||||| |||||||    
T  11949182 atattgcaccagccgggaattgaacccgggtctgaaccgtgg 11949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 38327914 - 38327799
Alignment:
Q  310 ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgcaccagccgggaatcgaacccaggtct 409  Q
    |||||||| |||||||||  | ||||||||||| ||||||||||||||| |||||| |||||  |    | ||||||||||||||||||||||| |||||    
T  38327914 ttcatccagtgtttcagggaaggtgatgttacccaacaccacaaatattttcatcacagctc--taagaaatgcaccagccgggaatcgaacccgggtct 38327817  T
Q  410 gtaccgtggcagggtact 427  Q
    ||||||||||||||||||    
T  38327816 gtaccgtggcagggtact 38327799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 427
Target Start/End: Complemental strand, 38322733 - 38322627
Alignment:
Q  318 atgtttcaggagaagtgatgttaccgaacaccacaaatattatcatcatagctccctcgatattgcaccagccgggaatcgaacccaggtctgtaccgtg 417  Q
    ||||||||||| | ||||||| ||| |||||||||| |||| |||||| |||||  ||   | ||||||||||||||||||||||| |||||||||||||    
T  38322733 atgtttcaggaaaggtgatgt-acccaacaccacaactattttcatcacagctc--tcagaaatgcaccagccgggaatcgaacccgggtctgtaccgtg 38322637  T
Q  418 gcagggtact 427  Q
    ||||||||||    
T  38322636 gcagggtact 38322627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 31965398 - 31965445
Alignment:
Q  380 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  31965398 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 31965445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 8219806 - 8219760
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  8219806 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 8219760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 25796248 - 25796198
Alignment:
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25796248 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 25796198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 19186067 - 19186017
Alignment:
Q  377 atattgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19186067 atattgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 19186017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 26741372 - 26741418
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  26741372 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 26741418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 30161906 - 30161860
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  30161906 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 30161860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 51386264 - 51386310
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  51386264 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 51386310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 310 - 427
Target Start/End: Original strand, 43848981 - 43849094
Alignment:
Q  310 ttcatccaatgtttcaggagaagtgatgttaccgaacaccacaaatattat-catcatagctccctcgatattgcaccagccgggaatcgaacccaggtc 408  Q
    |||||||| |||||||||| || |||||||||| |||| ||  ||||| || ||||| |||||     | ||||||||||||||||||||||||| ||||    
T  43848981 ttcatccagtgtttcaggataattgatgttacccaacatcatgaatataattcatcacagctc-----aaattgcaccagccgggaatcgaacccgggtc 43849075  T
Q  409 tgtaccgtggcagggtact 427  Q
    |||||||||||||||||||    
T  43849076 tgtaccgtggcagggtact 43849094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 30953117 - 30953164
Alignment:
Q  380 ttgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  30953117 ttgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 30953164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 27981121 - 27981075
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  27981121 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 27981075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 21882979 - 21882933
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  21882979 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 21882933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 3520707 - 3520800
Alignment:
Q  7 tcgaagaatatgcaaaacactaggatcgccacataaatgtagctcatgaaccttaaaaccaaggagcactctagtcctggcatatcctctatac 100  Q
    ||||| ||||| ||||||||||||||| || |||||||||| ||| | | || | |||||||||||| | |||||||  ||||| |||||||||    
T  3520707 tcgaacaatatccaaaacactaggatcaccgcataaatgtatctcgtcagccatcaaaccaaggagcgccctagtccatgcataacctctatac 3520800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Original strand, 4767493 - 4767539
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  4767493 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 4767539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 38551400 - 38551354
Alignment:
Q  381 tgcaccagccgggaatcgaacccaggtctgtaccgtggcagggtact 427  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||    
T  38551400 tgcaccagccgggaatcgaacccgggtctgtaccgtggcagggtact 38551354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University