View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_35 (Length: 427)
Name: NF3582_high_35
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 6009808 - 6009408
Alignment:
| Q |
9 |
gaagcaaaggtgaattagtcacataatcaacaaaattattcaataaacactaaccaaatgtggccatggaactgacgcatatatcgtaacggagtgcacc |
108 |
Q |
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| T |
6009808 |
gaagcaaaggtgaattagtcacataatcaacaaaattattcaataaacactaaccaaatgtggccatggaactgacgcatatatcgtaacggagtgcacc |
6009709 |
T |
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| Q |
109 |
ataagcgattcgaaggcgcaaattagctaccagagcatcgagtttcccagtccgtttttgtaccaacattcctcctggtctcatttcccattggtattct |
208 |
Q |
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| T |
6009708 |
ataagcgattcgaaggcgcaaattagctaccagagcatcgagtttcccagtccgtttttgtaccaacattcctcctggtctcatttcccattggtattct |
6009609 |
T |
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| Q |
209 |
tcttgttctcttttgtgagacgacatggtttctcttgtaccacgactttcactgttagcgttcagcttcttcttcatcattttgaactatgttttctagc |
308 |
Q |
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| T |
6009608 |
tcttgttctcttttgtgagacgacatggtttctcttgtaccacgactttcactgttagcgttcagcttcttcttcatcattttgaactatgttttctagc |
6009509 |
T |
|
| Q |
309 |
aaaacgagggaaaatatctaagacaagaaactttgtaccgacagaattcagaaacaggttgtaatgtttggttcttgtggtgttttatatactaccactc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6009508 |
aaaacgagggaaaatatctaagacaagaaactttgtaccgacagaattcagaaacaggttgtaatgtttggttcttgtggtgttttatatactaccactc |
6009409 |
T |
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| Q |
409 |
t |
409 |
Q |
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| T |
6009408 |
t |
6009408 |
T |
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