View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_high_36 (Length: 427)

Name: NF3582_high_36
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_high_36
NF3582_high_36
[»] chr8 (1 HSPs)
chr8 (11-414)||(20701110-20701513)
[»] chr2 (3 HSPs)
chr2 (29-185)||(33727567-33727723)
chr2 (373-406)||(8761589-8761622)
chr2 (373-409)||(14414917-14414953)
[»] chr5 (3 HSPs)
chr5 (371-406)||(20721051-20721086)
chr5 (373-405)||(21212080-21212112)
chr5 (373-409)||(31561366-31561402)
[»] chr4 (3 HSPs)
chr4 (375-409)||(46853867-46853901)
chr4 (373-406)||(11269697-11269730)
chr4 (373-405)||(36490571-36490603)
[»] chr3 (2 HSPs)
chr3 (375-409)||(27532839-27532873)
chr3 (373-409)||(25874133-25874169)
[»] chr1 (2 HSPs)
chr1 (373-406)||(29506830-29506863)
chr1 (373-409)||(29451004-29451040)
[»] chr7 (1 HSPs)
chr7 (373-405)||(21928144-21928176)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 20701110 - 20701513
Alignment:
Q  11 cagagagagatcctctttcacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcagtatctatgtcgtaaagttgc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20701110 cagagagagatcctctttcacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcaatatctatgtcgtaaagttgc 20701209  T
Q  111 aggacatcatttttctttgccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaattatctatcaccaatgtttatttca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20701210 aggacatcatttttctttgccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaattatctatcaccaatgtttatttca 20701309  T
Q  211 agttttaggttgcaattgtagaatttttcatgtctttcaattttaaatatatgtcagaatcacagtgaaccagaatgattttgcaatagttacactttct 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||    
T  20701310 agttttaggttgcaattgtagaatttttcatgtctttcaattttaaatatatgttagaatcacggtgaaccagtatgattttgcaatagttacactttct 20701409  T
Q  311 agctcgtaacttttgcaagatcgcaccgtattcgaacacttttgcaatatttaaggatcataagcttaacttagttggtatggacaatacataataataa 410  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||    
T  20701410 agctagtaacttttgcaagatcgcaccctattctaacacttttgcaatagttaagaatcatatgcttaactcagttggtatggacaatacataataataa 20701509  T
Q  411 taat 414  Q
    ||||    
T  20701510 taat 20701513  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 33727567 - 33727723
Alignment:
Q  29 cacagttgagtttaccacctggtttcagattcttccccactgatgaggagcttcttgttcagtatctatgtcgtaaagttgcaggacatcatttttcttt 128  Q
    |||| ||||||||||| |||||||| ||||| | |||||||||||| |||||||||||||| ||||||||||| ||||| || || |||||||||||| |    
T  33727567 cacaattgagtttacctcctggttttagattttaccccactgatgaagagcttcttgttcaatatctatgtcgcaaagtagctggtcatcatttttctct 33727666  T
Q  129 gccaattattgctgaaattgatttgtataaatttgatccttgggttcttccaggtaa 185  Q
     | ||| ||||||||||||||| | || ||||| || || ||| |||||||| ||||    
T  33727667 tcaaatcattgctgaaattgatctctacaaattcgacccatggattcttccaagtaa 33727723  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 8761622 - 8761589
Alignment:
Q  373 agcttaacttagttggtatggacaatacataata 406  Q
    ||||||||| ||||||||||||||||||||||||    
T  8761622 agcttaactcagttggtatggacaatacataata 8761589  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 14414953 - 14414917
Alignment:
Q  373 agcttaacttagttggtatggacaatacataataata 409  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  14414953 agcttaactcagttggtatggacaatgcataataata 14414917  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 406
Target Start/End: Original strand, 20721051 - 20721086
Alignment:
Q  371 taagcttaacttagttggtatggacaatacataata 406  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20721051 taagcttaactcagttggtatggacaatacataata 20721086  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 21212112 - 21212080
Alignment:
Q  373 agcttaacttagttggtatggacaatacataat 405  Q
    ||||||||||||||| |||||||||||||||||    
T  21212112 agcttaacttagttgatatggacaatacataat 21212080  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 31561402 - 31561366
Alignment:
Q  373 agcttaacttagttggtatggacaatacataataata 409  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  31561402 agcttaactcagttggtatggacaatgcataataata 31561366  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 409
Target Start/End: Original strand, 46853867 - 46853901
Alignment:
Q  375 cttaacttagttggtatggacaatacataataata 409  Q
    ||||||| |||||||||||||||||||||||||||    
T  46853867 cttaactcagttggtatggacaatacataataata 46853901  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 11269697 - 11269730
Alignment:
Q  373 agcttaacttagttggtatggacaatacataata 406  Q
    |||||||||||||||||| |||||||||||||||    
T  11269697 agcttaacttagttggtaaggacaatacataata 11269730  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Original strand, 36490571 - 36490603
Alignment:
Q  373 agcttaacttagttggtatggacaatacataat 405  Q
    |||||||||||||||||||||||||| ||||||    
T  36490571 agcttaacttagttggtatggacaatgcataat 36490603  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 409
Target Start/End: Original strand, 27532839 - 27532873
Alignment:
Q  375 cttaacttagttggtatggacaatacataataata 409  Q
    ||||||| |||||||||||||||||||||||||||    
T  27532839 cttaactcagttggtatggacaatacataataata 27532873  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Original strand, 25874133 - 25874169
Alignment:
Q  373 agcttaacttagttggtatggacaatacataataata 409  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  25874133 agcttaactcagttggtatggacaatgcataataata 25874169  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 29506830 - 29506863
Alignment:
Q  373 agcttaacttagttggtatggacaatacataata 406  Q
    ||||||||||||||||||| ||||||||||||||    
T  29506830 agcttaacttagttggtatagacaatacataata 29506863  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 29451040 - 29451004
Alignment:
Q  373 agcttaacttagttggtatggacaatacataataata 409  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  29451040 agcttaactcagttggtatggacaatgcataataata 29451004  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 21928176 - 21928144
Alignment:
Q  373 agcttaacttagttggtatggacaatacataat 405  Q
    |||||||||||||||||||||||||| ||||||    
T  21928176 agcttaacttagttggtatggacaatgcataat 21928144  T

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