View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_high_37 (Length: 424)
Name: NF3582_high_37
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_37 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 6012260 - 6011837
Alignment:
| Q |
1 |
cgatgtgttcaaaaaccgctactctatagcaccgatattaaacaaaattgattcttactcgacgccatatgagaaaaaatgatggaaattaccttgctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6012260 |
cgatgtgttcaaaaaccgctactctatagcaccgatattaaacaaaattgattcttactcgacgccatatgagaaaaaatgatggaaattaccttgctat |
6012161 |
T |
|
| Q |
101 |
gttgctccatcctgacatctaagggaacatcgtcaacctttgtgaaacctccaagaggatgaagcaataaaatcggatttttgtaacccatgtctagtag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6012160 |
gttgctccatcctgacatctaagggaacatcgtcaacctttgtgaaacctccaagaggatgaagcaataaaatcggatttttgtaacccatgtctagtag |
6012061 |
T |
|
| Q |
201 |
gcgttgacgagtatcgttcattaacaaggcatgaccgttatgcacaggatttcttaactgaaaggcgaaaactgcatcagctttacgcctatcaaattct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6012060 |
acgttgacgagtatcgttcattaacaaggcatgaccgttatgcacaggatttcttaactgaaaggcgaaaactgcatcagctttacgcctatcaaattct |
6011961 |
T |
|
| Q |
301 |
tcccgaagttgcttgggagatagcctgtagttatcaagaccatcattgtatttgataggttttagcacttccaaatctcctccaataagccaatttccag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6011960 |
tcccgaagttgcttgggagatagcctgtagttatcaagaccatcattgtatttgataggttttagcacttccaaatctcctccaataagccaatttccag |
6011861 |
T |
|
| Q |
401 |
ctggagcaatgacctcctcaacat |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6011860 |
ctggagcaatgacctcctcaacat |
6011837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University