View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_high_4 (Length: 732)
Name: NF3582_high_4
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 338 - 714
Target Start/End: Original strand, 41906339 - 41906713
Alignment:
| Q |
338 |
atctcattagataaagacagagccgcttatgtaattataatttagcttttgtattgtaattgcaaaaacaaaaaggttaaaactagacagagtgacgatt |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41906339 |
atctcattagataaagacagagccgcttat--aattataatttagcttttgtattgtaattgcaaaaacaaaaaggttaaaactagacagagtgacgatt |
41906436 |
T |
|
| Q |
438 |
tgatctgatctcagccgtgaaaacttaactttgattagttgtttgttttcggtaataagcaaatgaaataatgattataatttgtaaatttatgaattgt |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41906437 |
tgatctgatctcagccgtgaaaacttaactttgattagttgtttgttttcggtaataagcaaatgaaataaggattataatttgtaaatttatgaattgt |
41906536 |
T |
|
| Q |
538 |
gatgttacgtgagagcgttacctggctctctgttcagtaatagttgaacttttgagtgtggaacttgtaacaaatttgttaggtaggtgaaggggatcaa |
637 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41906537 |
gatgttacgtgagagcgttacctggctctctgttcagtaatagttgaacttttgagtgtggaacttgtaacaaatttgttaggtaggtgaaggggatcaa |
41906636 |
T |
|
| Q |
638 |
ctttactattatcggcataattacttttgagtatgtaggtgattaaaactaattaattgttattattatgggacccg |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41906637 |
ctttactattatcggcataattacttttgagtatgtaggttattaaaactaattaattgttattattatgggacccg |
41906713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 34 - 298
Target Start/End: Original strand, 41906032 - 41906297
Alignment:
| Q |
34 |
taattgggttacctgaaaagccttggaaataatatcatcatgaagtgaaacatggtttctacaattacagcagcagtacaagcgaggcactataaattcc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41906032 |
taattgggttacctgaaaagccttggaaataatatcatcatgaagtgaaacatggtttctacaattacagcagcagtacaagcgaggcactataaattcc |
41906131 |
T |
|
| Q |
134 |
gccatgattaa-ttatttggtaactgactctatatttcagatggagataacgtaagtgaccaattcgatcataaagctcagtctgcaagaagaggataag |
232 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41906132 |
gccatgattaaattatttggtaactgactctatatttcagatggagataacgtaagtgaccaattcgatcataaagctcagtctgcaagaagaggataag |
41906231 |
T |
|
| Q |
233 |
aacaagagttagcgtgctacacttaattaattcatcgcaaagatgagttgtgtgaaatgtgaatat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41906232 |
aacaagagttagcgtgctacacttaattaattcatcgcaaagatgagttgtgtgaaatgtgaatat |
41906297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University