View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_high_42 (Length: 415)

Name: NF3582_high_42
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_high_42
NF3582_high_42
[»] chr8 (30 HSPs)
chr8 (174-348)||(2415962-2416136)
chr8 (16-101)||(22547483-22547568)
chr8 (65-181)||(39601635-39601754)
chr8 (16-82)||(18441389-18441455)
chr8 (16-80)||(41274653-41274717)
chr8 (16-83)||(3395924-3395991)
chr8 (18-80)||(41858073-41858135)
chr8 (20-80)||(26451541-26451601)
chr8 (16-75)||(24860448-24860507)
chr8 (18-86)||(37779707-37779773)
chr8 (30-83)||(38871831-38871884)
chr8 (65-178)||(34366846-34366961)
chr8 (65-137)||(39939238-39939313)
chr8 (65-120)||(38604271-38604328)
chr8 (18-80)||(42602521-42602583)
chr8 (65-101)||(22550888-22550924)
chr8 (65-120)||(44933852-44933909)
chr8 (106-178)||(7577050-7577123)
chr8 (65-101)||(2335171-2335207)
chr8 (65-101)||(5533048-5533084)
chr8 (65-101)||(27501614-27501650)
chr8 (65-101)||(28617582-28617618)
chr8 (65-101)||(32584066-32584102)
chr8 (65-178)||(41250095-41250210)
chr8 (18-80)||(15033095-15033159)
chr8 (65-120)||(41016407-41016464)
chr8 (123-180)||(27703993-27704050)
chr8 (65-93)||(39505-39533)
chr8 (65-93)||(1114765-1114793)
chr8 (65-101)||(43363283-43363319)
[»] chr1 (43 HSPs)
chr1 (16-178)||(44596795-44596960)
chr1 (16-178)||(49426648-49426813)
chr1 (16-89)||(27487614-27487687)
chr1 (16-87)||(14174859-14174930)
chr1 (16-80)||(29763167-29763231)
chr1 (16-80)||(42572705-42572769)
chr1 (18-80)||(49927451-49927513)
chr1 (16-71)||(26637204-26637259)
chr1 (16-80)||(6434809-6434873)
chr1 (16-72)||(13972131-13972187)
chr1 (30-80)||(49395664-49395714)
chr1 (65-187)||(51271614-51271739)
chr1 (65-155)||(94367-94459)
chr1 (65-179)||(29765552-29765669)
chr1 (16-81)||(13147556-13147621)
chr1 (16-80)||(29709259-29709323)
chr1 (65-137)||(46886410-46886485)
chr1 (16-76)||(51269003-51269063)
chr1 (20-68)||(4208454-4208502)
chr1 (65-101)||(19161906-19161942)
chr1 (16-80)||(29435034-29435097)
chr1 (65-120)||(4883226-4883283)
chr1 (16-71)||(36908640-36908699)
chr1 (16-53)||(41779767-41779804)
chr1 (65-101)||(586628-586664)
chr1 (18-80)||(19159684-19159750)
chr1 (65-101)||(19914480-19914516)
chr1 (65-101)||(30194435-30194471)
chr1 (16-86)||(35526983-35527057)
chr1 (65-101)||(49661756-49661792)
chr1 (65-96)||(9710597-9710628)
chr1 (65-120)||(2425708-2425765)
chr1 (23-81)||(24364680-24364738)
chr1 (65-98)||(44598929-44598962)
chr1 (68-101)||(48228328-48228361)
chr1 (65-93)||(6562184-6562212)
chr1 (65-93)||(15047304-15047332)
chr1 (65-93)||(20349479-20349507)
chr1 (65-93)||(30910026-30910054)
chr1 (65-93)||(41453860-41453888)
chr1 (65-93)||(44470034-44470062)
chr1 (65-101)||(49429158-49429194)
chr1 (65-93)||(52802152-52802180)
[»] chr4 (47 HSPs)
chr4 (16-101)||(34530743-34530828)
chr4 (16-159)||(39588045-39588191)
chr4 (16-88)||(34154376-34154448)
chr4 (16-88)||(51429277-51429349)
chr4 (16-80)||(56138313-56138377)
chr4 (16-92)||(56304899-56304975)
chr4 (18-88)||(6283417-6283487)
chr4 (65-181)||(16984184-16984303)
chr4 (16-80)||(44561278-44561342)
chr4 (16-80)||(958542-958606)
chr4 (65-181)||(39590591-39590710)
chr4 (16-82)||(42885508-42885576)
chr4 (67-155)||(16983479-16983570)
chr4 (19-82)||(243296-243359)
chr4 (65-184)||(28081387-28081508)
chr4 (20-80)||(1041996-1042056)
chr4 (18-92)||(40354548-40354626)
chr4 (65-178)||(44674099-44674214)
chr4 (18-80)||(28081519-28081582)
chr4 (30-79)||(4786296-4786345)
chr4 (65-120)||(21022911-21022968)
chr4 (34-80)||(29700268-29700314)
chr4 (65-120)||(40833633-40833690)
chr4 (64-101)||(28084012-28084049)
chr4 (65-101)||(14200575-14200611)
chr4 (18-82)||(21017951-21018018)
chr4 (65-101)||(38369205-38369241)
chr4 (65-101)||(46254471-46254507)
chr4 (65-126)||(50274747-50274810)
chr4 (65-101)||(51492085-51492121)
chr4 (18-80)||(55793981-55794047)
chr4 (65-96)||(50278821-50278852)
chr4 (85-148)||(49892418-49892483)
chr4 (68-101)||(23220692-23220725)
chr4 (65-119)||(51037491-51037547)
chr4 (65-93)||(3403869-3403897)
chr4 (18-80)||(6178056-6178122)
chr4 (65-101)||(7485684-7485720)
chr4 (65-93)||(9890016-9890044)
chr4 (23-59)||(11287557-11287593)
chr4 (65-93)||(15995744-15995772)
chr4 (65-93)||(19069209-19069237)
chr4 (65-93)||(19073678-19073706)
chr4 (55-83)||(37865200-37865228)
chr4 (18-80)||(49094145-49094211)
chr4 (65-101)||(49889697-49889733)
chr4 (65-101)||(51036517-51036553)
[»] chr7 (28 HSPs)
chr7 (16-88)||(21188374-21188446)
chr7 (16-96)||(34139916-34139996)
chr7 (18-80)||(30355189-30355251)
chr7 (16-80)||(40587722-40587786)
chr7 (16-80)||(41047838-41047902)
chr7 (16-80)||(46863292-46863356)
chr7 (19-80)||(28980123-28980184)
chr7 (16-80)||(36394886-36394950)
chr7 (16-78)||(42682057-42682119)
chr7 (67-181)||(46738733-46738850)
chr7 (16-80)||(17838711-17838776)
chr7 (16-80)||(28115480-28115544)
chr7 (20-80)||(43686859-43686919)
chr7 (16-72)||(48269710-48269766)
chr7 (16-75)||(45364168-45364227)
chr7 (65-120)||(27657031-27657088)
chr7 (65-101)||(7083-7119)
chr7 (65-101)||(8070-8106)
chr7 (65-101)||(17840913-17840949)
chr7 (65-101)||(42583083-42583119)
chr7 (65-101)||(46908496-46908532)
chr7 (123-178)||(36185640-36185695)
chr7 (123-178)||(40323715-40323770)
chr7 (18-53)||(48316259-48316294)
chr7 (65-120)||(12210613-12210670)
chr7 (65-120)||(45258027-45258084)
chr7 (65-93)||(618748-618776)
chr7 (65-101)||(17838664-17838700)
[»] chr6 (28 HSPs)
chr6 (16-126)||(29061283-29061395)
chr6 (16-80)||(12783905-12783969)
chr6 (16-88)||(32034340-32034412)
chr6 (16-78)||(29065791-29065853)
chr6 (16-78)||(29074804-29074866)
chr6 (16-78)||(29079568-29079630)
chr6 (16-78)||(29107377-29107439)
chr6 (65-178)||(29076346-29076462)
chr6 (65-178)||(29109879-29109995)
chr6 (65-178)||(29111319-29111435)
chr6 (16-80)||(13401547-13401611)
chr6 (65-182)||(14012398-14012517)
chr6 (16-80)||(17596764-17596831)
chr6 (65-178)||(11840273-11840389)
chr6 (23-60)||(26855976-26856013)
chr6 (65-101)||(2109531-2109567)
chr6 (65-101)||(15888823-15888859)
chr6 (123-178)||(28362818-28362873)
chr6 (18-82)||(30258263-30258329)
chr6 (65-96)||(31771764-31771795)
chr6 (65-120)||(25554698-25554755)
chr6 (18-80)||(6204888-6204954)
chr6 (65-101)||(6760895-6760931)
chr6 (123-179)||(11687976-11688032)
chr6 (18-80)||(11691855-11691921)
chr6 (65-93)||(18347063-18347091)
chr6 (65-93)||(28362754-28362782)
chr6 (16-52)||(34634281-34634317)
[»] scaffold0176 (1 HSPs)
scaffold0176 (16-96)||(841-921)
[»] chr5 (29 HSPs)
chr5 (65-178)||(7757259-7757375)
chr5 (18-88)||(42865754-42865824)
chr5 (16-80)||(542738-542802)
chr5 (16-80)||(18307315-18307379)
chr5 (16-80)||(25497572-25497636)
chr5 (65-178)||(43094599-43094715)
chr5 (16-80)||(35564322-35564386)
chr5 (65-155)||(11345965-11346057)
chr5 (16-80)||(11346068-11346133)
chr5 (65-178)||(7762267-7762382)
chr5 (30-80)||(20192414-20192464)
chr5 (16-80)||(8537226-8537291)
chr5 (16-80)||(3600398-3600462)
chr5 (65-120)||(8539539-8539596)
chr5 (18-92)||(8576916-8576994)
chr5 (65-120)||(3891476-3891533)
chr5 (16-53)||(1401388-1401425)
chr5 (70-155)||(43093965-43094053)
chr5 (65-101)||(11348498-11348534)
chr5 (65-96)||(30887383-30887414)
chr5 (68-126)||(1397376-1397436)
chr5 (65-182)||(13568098-13568218)
chr5 (68-126)||(41798805-41798865)
chr5 (65-101)||(14686-14722)
chr5 (65-93)||(7021881-7021909)
chr5 (18-80)||(19037416-19037482)
chr5 (18-92)||(27662152-27662230)
chr5 (65-93)||(34122546-34122574)
chr5 (65-93)||(37820877-37820905)
[»] chr3 (58 HSPs)
chr3 (16-80)||(34694382-34694446)
chr3 (16-83)||(19454299-19454366)
chr3 (18-80)||(55207613-55207675)
chr3 (16-80)||(51696522-51696586)
chr3 (18-80)||(41803059-41803121)
chr3 (18-80)||(51402348-51402410)
chr3 (16-80)||(43476253-43476317)
chr3 (16-80)||(45101796-45101860)
chr3 (16-80)||(55385198-55385262)
chr3 (16-78)||(7245155-7245217)
chr3 (16-80)||(13896824-13896888)
chr3 (20-76)||(41137773-41137829)
chr3 (16-76)||(41577140-41577200)
chr3 (16-80)||(43568927-43568991)
chr3 (16-80)||(52570514-52570578)
chr3 (65-164)||(55385085-55385187)
chr3 (65-179)||(16647170-16647287)
chr3 (16-80)||(2271260-2271325)
chr3 (27-80)||(24703374-24703427)
chr3 (16-80)||(36134384-36134449)
chr3 (65-178)||(43478853-43478969)
chr3 (16-80)||(49609444-49609508)
chr3 (16-78)||(4004750-4004813)
chr3 (16-66)||(2426559-2426609)
chr3 (65-156)||(43476147-43476242)
chr3 (18-92)||(46402405-46402483)
chr3 (65-126)||(48246399-48246462)
chr3 (16-80)||(49219739-49219803)
chr3 (65-179)||(48250892-48251009)
chr3 (65-182)||(600567-600687)
chr3 (16-82)||(34648150-34648218)
chr3 (65-101)||(4002754-4002790)
chr3 (65-101)||(4004826-4004862)
chr3 (66-101)||(2271337-2271372)
chr3 (65-120)||(28817024-28817081)
chr3 (65-119)||(34543159-34543215)
chr3 (65-101)||(12897838-12897874)
chr3 (65-101)||(27739590-27739626)
chr3 (65-101)||(36134337-36134373)
chr3 (19-78)||(46347672-46347731)
chr3 (65-96)||(49219814-49219845)
chr3 (68-120)||(50998706-50998760)
chr3 (65-120)||(2267023-2267080)
chr3 (23-53)||(18436767-18436797)
chr3 (106-182)||(5138333-5138410)
chr3 (65-98)||(16484479-16484512)
chr3 (66-120)||(19750035-19750091)
chr3 (65-93)||(2743420-2743448)
chr3 (65-93)||(4002528-4002556)
chr3 (65-101)||(10492041-10492077)
chr3 (65-101)||(11249547-11249583)
chr3 (65-93)||(13743315-13743343)
chr3 (65-101)||(14043921-14043957)
chr3 (67-120)||(19988452-19988507)
chr3 (20-80)||(20366253-20366313)
chr3 (65-101)||(24703438-24703474)
chr3 (65-93)||(50953324-50953352)
chr3 (65-93)||(50957689-50957717)
[»] chr2 (30 HSPs)
chr2 (16-80)||(2920464-2920528)
chr2 (16-80)||(24512228-24512292)
chr2 (16-80)||(43491170-43491234)
chr2 (18-80)||(41500184-41500246)
chr2 (16-79)||(40679545-40679608)
chr2 (65-178)||(7189974-7190089)
chr2 (65-178)||(23347351-23347466)
chr2 (16-82)||(29093779-29093842)
chr2 (67-155)||(3943217-3943307)
chr2 (16-80)||(2648178-2648242)
chr2 (16-80)||(39393098-39393162)
chr2 (22-80)||(10365746-10365804)
chr2 (65-179)||(43870144-43870261)
chr2 (18-92)||(28472136-28472214)
chr2 (16-79)||(26858175-26858238)
chr2 (65-120)||(28477090-28477147)
chr2 (16-80)||(34638201-34638262)
chr2 (16-81)||(16580546-16580611)
chr2 (65-155)||(23346738-23346830)
chr2 (65-120)||(36510879-36510936)
chr2 (65-119)||(30803041-30803097)
chr2 (65-101)||(10425842-10425878)
chr2 (123-187)||(39377626-39377690)
chr2 (65-93)||(1096617-1096645)
chr2 (65-93)||(3795359-3795387)
chr2 (65-93)||(3803566-3803594)
chr2 (65-101)||(10424853-10424889)
chr2 (65-93)||(20951069-20951097)
chr2 (65-93)||(27276397-27276425)
chr2 (65-93)||(38945784-38945812)
[»] scaffold0192 (1 HSPs)
scaffold0192 (16-80)||(18847-18911)
[»] scaffold0199 (2 HSPs)
scaffold0199 (16-80)||(12335-12400)
scaffold0199 (68-101)||(12414-12447)
[»] scaffold0184 (1 HSPs)
scaffold0184 (72-181)||(18323-18435)
[»] scaffold0078 (1 HSPs)
scaffold0078 (72-181)||(54409-54521)
[»] scaffold0341 (1 HSPs)
scaffold0341 (65-93)||(17374-17402)
[»] scaffold0260 (1 HSPs)
scaffold0260 (65-93)||(11802-11830)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 174 - 348
Target Start/End: Complemental strand, 2416136 - 2415962
Alignment:
Q  174 ttctcaaaatgaaatatgcatttacgaaataatccttggccgcgagaggaaagaacaaaggctaatgagtttcatttcatatctagtctagtccactacc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||     
T  2416136 ttctcaaaatgaaatatgcatttacgaaataatccttggccgcgagaggaaagaacaaaggctagtgagtttcatttcatatctagtctagtccactact 2416037  T
Q  274 acttcgcggtgtaatataaaagcgtgcgagcgactcagacagagacagtatagtgattagtgaatgtgattgatc 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2416036 acttcgcggtgtaatataaaagcgtgcgagcgactcagacagagacagtatagtgattagtgaatgtgattgatc 2415962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 22547568 - 22547483
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||    
T  22547568 tgagatgaataattgatgagagagcttctgccagatttgtagtagaagatcctcggtagttaactgcagccggatttctaaaactt 22547483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 39601754 - 39601635
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgag-ggggcaaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||  ||  |||||||||||||||  ||||||| ||||||||| || |    
T  39601754 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgagaaggtaaaaacgtcatttactcgtgtggcacagccttatgtaatg 39601655  T
Q  162 tggaaatagcaattctcaaa 181  Q
    ||| ||||||||||||||||    
T  39601654 tgggaatagcaattctcaaa 39601635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 18441389 - 18441455
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  18441389 tgagatgaataatggatgagagagtttctgccagatttgtagcagaagatcctcggcagttaactgc 18441455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 41274717 - 41274653
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41274717 tgagatgaataatggatgagagagcttctgccagatttatagtagaagattctcggcagttaact 41274653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 3395991 - 3395924
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgca 83  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||    
T  3395991 tgagatgaataatggatgagagagtttctgccatatttgtagcagaagatcctcggcagttaactgca 3395924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 41858073 - 41858135
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  41858073 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaact 41858135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 26451601 - 26451541
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26451601 atgaataatagatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 26451541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 24860507 - 24860448
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagt 75  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||| |||||    
T  24860507 tgagatgaataatagatgagagagcttctgtcaaatttatagcagaagatcctccgcagt 24860448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 37779773 - 37779707
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagcc 86  Q
    ||||||||||||||||||||  |||||| ||||||| |||||||| ||||||| |||||||||||||||    
T  37779773 agatgaataatggatgagag--cttctgtcagatttgtagcagaatatcctcgacagttaactgcagcc 37779707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 38871884 - 38871831
Alignment:
Q  30 gatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgca 83  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||||||||    
T  38871884 gatgagagagctcctgccagatttgtagcagaagatccttggcagttaactgca 38871831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 34366961 - 34366846
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 162  Q
    ||||||| |||||||||||||||||||| ||||||||  ||| ||||||| |||||||  |||| ||| ||||||  ||||||| ||||||||| || ||    
T  34366961 tcctcggaagttaactgcagccggatttataaaacttcggcagttaactgacgaggggcaaaaaggtcttttactcgtgtggcacagccttatgtaatgt 34366862  T
Q  163 ggaaatagcaattctc 178  Q
    || || | ||||||||    
T  34366861 gggaacatcaattctc 34366846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 39939238 - 39939313
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttact 137  Q
    |||| ||||||||||||||||||||||||||||||||   || |||||||||||||| || |||||||||||||||    
T  39939238 tccttggcagttaactgcagccggatttctaaaacttcgacaattaactgtcgagggagcaaaaacgtcatttact 39939313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 38604271 - 38604328
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||||    
T  38604271 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgtcgagggg 38604328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 42602583 - 42602521
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||| | ||| || ||||||| || |||||||||||||||||||||||    
T  42602583 agatgaataatggatgagacaacttatgtcagatttgtatcagaagatcctcggcagttaact 42602521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 22550888 - 22550924
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||||||||||||||||||||    
T  22550888 tcctcggcagttaactgcagccggatttctaaaactt 22550924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 44933909 - 44933852
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  44933909 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 44933852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 178
Target Start/End: Complemental strand, 7577123 - 7577050
Alignment:
Q  106 ttaactgtcg-agggggcaaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 178  Q
    |||||||||| |||||  ||||||||||||||| |||||||| ||||||||| || |||| || ||||||||||    
T  7577123 ttaactgtcgcaggggtaaaaacgtcatttactcatgtggcacagccttatgtaatgtgggaacagcaattctc 7577050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 2335171 - 2335207
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2335171 tcctcggcagttaactgcagccgtatttctaaaactt 2335207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 5533048 - 5533084
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5533048 tcctcggcagttaactgcagccgtatttctaaaactt 5533084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 27501650 - 27501614
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27501650 tcctcggcagttaactgcagccgtatttctaaaactt 27501614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 28617618 - 28617582
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  28617618 tcctcggcagttaactgcagccgtatttctaaaactt 28617582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 32584102 - 32584066
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  32584102 tcctcggcagttaactgcagccgtatttctaaaactt 32584066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 41250095 - 41250210
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 162  Q
    ||||||||||| |||||||| ||||||||||||||||   || ||||||  |||||||  ||||||||| |||||  |||| || | |||||||||| ||    
T  41250095 tcctcggcagtaaactgcagtcggatttctaaaacttcgacagttaactaccgaggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgt 41250194  T
Q  163 ggaaatagcaattctc 178  Q
    || || | ||||||||    
T  41250195 gggaacaacaattctc 41250210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 15033095 - 15033159
Alignment:
Q  18 agatgaataatggatgaga-gagcttctgccagatttatag--cagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||| ||| ||||||||||||| |||  ||| |||||||||||||||||||    
T  15033095 agatgaataatggatgagaggagattctgccagatttgtaggtcag-agatcctcggcagttaact 15033159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 41016464 - 41016407
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||  |||||||||||||||  | | |||||||||||||||    
T  41016464 tcctcggcagttaactgcagttggatttctaaaacttcggtagttaactgtcgagggg 41016407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 27704050 - 27703993
Alignment:
Q  123 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctcaa 180  Q
    ||||||||||||| || ||||||| ||||||||| || |||| || ||||||||||||    
T  27704050 aaaacgtcatttatttgtgtggcacagccttatgtaatgtgggaacagcaattctcaa 27703993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 39533 - 39505
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  39533 tcctcggcagttaactgcagccggatttc 39505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 1114793 - 1114765
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  1114793 tcctcggcagttaactgcagccggatttc 1114765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 43363283 - 43363319
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  43363283 tcctcggtagttaactgcagccgtatttctaaaactt 43363319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 44596960 - 44596795
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgt 113  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||| ||| ||||||||||||| |||||||||||||||||  ||| |||||||     
T  44596960 tgagatgaataatggatgagagagtttctgccaaatttgtagcagaagatactcagcagttaactgcaaccggatttctaaaacttcggcagttaactgc 44596861  T
Q  114 cgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 178  Q
    |||| |||| |||||||||||||||  ||||||| || |||||| || |||| || | ||||||||    
T  44596860 cgagcgggcaaaaacgtcatttactcgtgtggcacagtcttatgtaatgtgggaacaacaattctc 44596795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 49426813 - 49426648
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaactgcagccggatttctaaaactt--gcatttaactg 112  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  ||  |||||||    
T  49426813 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaattgcagccggatttctaaaacttcggcggttaactg 49426714  T
Q  113 tcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 178  Q
     ||| |||  || ||||||||||||  ||||| | ||||||||  || ||| ||| ||||||||||    
T  49426713 ccgaagggaaaacacgtcatttactcgtgtggtacagccttatcaaatgtgtaaacagcaattctc 49426648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 27487614 - 27487687
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccgga 89  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27487614 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccgga 27487687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 14174859 - 14174930
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccg 87  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14174859 tgagatgaataatggatgagagagcttctgccagatttttagcagaagatcctcggcagttaactgcagccg 14174930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 29763167 - 29763231
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29763167 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 29763231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 42572705 - 42572769
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42572705 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 42572769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 49927451 - 49927513
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  49927451 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 49927513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26637204 - 26637259
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcgg 71  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26637204 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcgg 26637259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 6434873 - 6434809
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||    
T  6434873 tgagatgaataatggatgagagtgcttctaccagatttgtagcagaagatccttggcagttaact 6434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 13972187 - 13972131
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggc 72  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  13972187 tgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctcggc 13972131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 49395714 - 49395664
Alignment:
Q  30 gatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49395714 gatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 49395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 51271614 - 51271739
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||||||| |||||||||||||||||||||||||||  ||| ||||||| ||||||||| ||||||||||||||   ||||||| | ||||||| ||      
T  51271614 tcctcggcaattaactgcagccggatttctaaaacttcggcagttaactgccgagggggcaaaaacgtcatttacccgtgtggcacaaccttatgtaatt 51271713  T
Q  162 tggaaatagcaattctcaaaatgaaa 187  Q
    ||| || | ||||||||||| |||||    
T  51271714 tgggaacaacaattctcaaattgaaa 51271739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 94459 - 94367
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttat 155  Q
    ||||||| ||||||||||||| |||||||||||||||  ||| ||||||| ||| |||  ||||||||||||||| |||||||| ||||||||    
T  94459 tcctcggtagttaactgcagctggatttctaaaacttcggcagttaactgccgaagggcaaaaacgtcatttactcatgtggcacagccttat 94367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 29765552 - 29765669
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||||||||||||||||| |||||||||||||||||  ||| ||||||| ||||||| | ||||||||||||| |  ||||| | | |||||||||| |    
T  29765552 tcctcggcagttaactgcaaccggatttctaaaacttcggcagttaactgccgaggggacaaaaacgtcatttattcgtgtggtacaaccttatgcaatg 29765651  T
Q  162 tggaaatagcaattctca 179  Q
    ||| || | |||||||||    
T  29765652 tgggaacaacaattctca 29765669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 13147621 - 13147556
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactg 81  Q
    |||||||||||||||||||||||| || | |||||||| |||||||||||| ||| ||||||||||    
T  13147621 tgagatgaataatggatgagagagtttttaccagatttgtagcagaagatcatcgacagttaactg 13147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 29709259 - 29709323
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| |||||| | | |||||||||    
T  29709259 tgagatgaataatggatgaaagagcttctgctagatttatagcaaaagatctttgacagttaact 29709323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 46886410 - 46886485
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttact 137  Q
    ||||||||| |||||| ||||||||||||||||||||  ||| ||||||| ||||||||| |||||||||||||||    
T  46886410 tcctcggcacttaactacagccggatttctaaaacttcggcagttaactgccgagggggcaaaaacgtcatttact 46886485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 51269063 - 51269003
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagtt 76  Q
    |||||||||||||| |||||||||||||||| | |||| ||||||||||||||||| ||||    
T  51269063 tgagatgaataatgaatgagagagcttctgctaaatttgtagcagaagatcctcggtagtt 51269003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 4208502 - 4208454
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcct 68  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  4208502 atgaataatggatgagagagcttctggtagatttgtagcagaagatcct 4208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 19161942 - 19161906
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||||||||||||||||||||    
T  19161942 tcctcggcagttaactgcagccggatttctaaaactt 19161906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 29435097 - 29435034
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||| || |||||| ||||||||||    
T  29435097 tgagatgaataatggatgagagaacttctgccaaatttgtagca-aaaatcctctgcagttaact 29435034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 4883283 - 4883226
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| |||||||| ||||||    
T  4883283 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgttgagggg 4883226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 36908699 - 36908640
Alignment:
Q  16 tgagatgaataatggatga----gagagcttctgccagatttatagcagaagatcctcgg 71  Q
    |||||||||||||||||||    ||||||||||||||||||| ||||||||| |||||||    
T  36908699 tgagatgaataatggatgaatgagagagcttctgccagatttgtagcagaagctcctcgg 36908640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 41779804 - 41779767
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagattt 53  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  41779804 tgagatgaataatggatgagagagcttctgctagattt 41779767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 586628 - 586664
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  586628 tcctcggcagttaactgcagccgtatttctaaaactt 586664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 19159750 - 19159684
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||    
T  19159750 agatgaataatggatgagaggagattctgccagattttgtagcgcagaagatcctcggcagttaact 19159684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 19914516 - 19914480
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19914516 tcctcggcagttaactgcagccgtatttctaaaactt 19914480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 30194471 - 30194435
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30194471 tcctcggcagttaactgcagccgtatttctaaaactt 30194435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 35526983 - 35527057
Alignment:
Q  16 tgagatgaataatggatgaga--gagcttctgccagatttat--agcagaagatcctcggcagttaactgcagcc 86  Q
    |||||||||||||||||||||  ||| |||||||| |||| |  ||||||||||||||  |||||||||||||||    
T  35526983 tgagatgaataatggatgagatagaggttctgccatatttttgtagcagaagatcctctacagttaactgcagcc 35527057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 49661756 - 49661792
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49661756 tcctcggcagttaactgcagccgtatttctaaaactt 49661792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 96
Target Start/End: Complemental strand, 9710628 - 9710597
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaa 96  Q
    ||||||||||||||||||||||||||||||||    
T  9710628 tcctcggcagttaactgcagccggatttctaa 9710597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 2425708 - 2425765
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||| ||||||||||||||||||||||| |||||||  ||| ||||||| |||||||    
T  2425708 tcctcagcagttaactgcagccggatttccaaaacttcggcagttaactgccgagggg 2425765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 24364680 - 24364738
Alignment:
Q  23 aataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactg 81  Q
    ||||||||||| ||||||||||||||||||| |||||  ||  | ||||||||||||||    
T  24364680 aataatggatgtgagagcttctgccagatttgtagcaagagcgcatcggcagttaactg 24364738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 44598929 - 44598962
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaa 98  Q
    ||||||||||||||||||||||||||| ||||||    
T  44598929 tcctcggcagttaactgcagccggattactaaaa 44598962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 48228328 - 48228361
Alignment:
Q  68 tcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||| ||||||||||||||    
T  48228328 tcggcagttaactgcagccagatttctaaaactt 48228361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 6562184 - 6562212
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  6562184 tcctcggcagttaactgcagccggatttc 6562212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 15047332 - 15047304
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  15047332 tcctcggcagttaactgcagccggatttc 15047304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 20349507 - 20349479
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  20349507 tcctcggcagttaactgcagccggatttc 20349479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 30910026 - 30910054
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  30910026 tcctcggcagttaactgcagccggatttc 30910054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 41453888 - 41453860
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  41453888 tcctcggcagttaactgcagccggatttc 41453860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 44470034 - 44470062
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  44470034 tcctcggcagttaactgcagccggatttc 44470062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 49429158 - 49429194
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||  ||||||||||||||||||||||||||    
T  49429158 tcctcggcaactaactgcagccggatttctaaaactt 49429194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 52802180 - 52802152
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  52802180 tcctcggcagttaactgcagccggatttc 52802152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 34530743 - 34530828
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  34530743 tgagatgaataatggatgagagagcttctgccaaatttgtagcagaagatcctcggcagttaactgcagccagatttctaaaactt 34530828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 39588191 - 39588045
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgt 113  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||||||  | |  ||| |||||||     
T  39588191 tgagatgaataatggatgagagagcttctgccatatttgtagcagaagatcctcggcagttaactgcagtcgaatttctaattcctcggcagttaactgc 39588092  T
Q  114 cgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaa 159  Q
    ||||||||| |||||||||||||||  |||| || | ||||||||||    
T  39588091 cgagggggcaaaaacgtcatttactcgtgtgacacatccttatgcaa 39588045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 34154376 - 34154448
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccgg 88  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  34154376 tgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctctgcagttaactgcagccgg 34154448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 51429277 - 51429349
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccgg 88  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||    
T  51429277 tgagatgaataatggatgagagagcttcttccagatttgtagcagaagatcctcgacagttaactgcagccgg 51429349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 56138377 - 56138313
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  56138377 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 56138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 56304975 - 56304899
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccggattt 92  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||    
T  56304975 tgagatgaataatggatgagagagcttctgccagatttgtagcagaaaatcctcggcaattaactgcagccagattt 56304899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 6283417 - 6283487
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccgg 88  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||    
T  6283417 agatgaataatggatgagagagcttcggccagatttgaagcagaagatcctcggcagttaactgcagccgg 6283487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 16984184 - 16984303
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggggg-caaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||  |||||||||||||||  ||||||| ||||||||  || |    
T  16984184 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttatcaaatg 16984283  T
Q  162 tggaaatagcaattctcaaa 181  Q
    || ||| |||||||||||||    
T  16984284 tgtaaacagcaattctcaaa 16984303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 44561278 - 44561342
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  44561278 tgagatgaataatggatgagagagcttctgccagatttgtagcagacgatcctcggcagttaact 44561342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 958542 - 958606
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  958542 tgagaagaataatggatgagagagcttctgccggatttgtagcagaagatcctcggcagttaact 958606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 39590591 - 39590710
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||||||||||||||||||| | |||||||||||||  ||| ||||||| ||||||||| ||||| |||||||||  ||||||| ||||||||  || |    
T  39590591 tcctcggcagttaactgcagctgtatttctaaaacttcggcagttaactgccgagggggcaaaaacatcatttactcgtgtggcacagccttatataatg 39590690  T
Q  162 tggaaatagcaattctcaaa 181  Q
    |||||| |||||||||||||    
T  39590691 tggaaacagcaattctcaaa 39590710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 42885576 - 42885508
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccaga--tttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||||||||||||||    
T  42885576 tgagatgaataatggatgagagagcttctgccagatttttgtagcagaagatcatcggcagttaactgc 42885508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 16983570 - 16983479
Alignment:
Q  67 ctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggggg-caaaacgtcatttacttatgtggcagagccttat 155  Q
    ||||||||||||||| |||||||||||||||||||  ||| ||||||| ||||||||  |||||||||||||||  ||||||| ||||||||    
T  16983570 ctcggcagttaactgtagccggatttctaaaacttcggcagttaactgccgagggggtaaaaacgtcatttactcgtgtggcacagccttat 16983479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 243296 - 243359
Alignment:
Q  19 gatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||  |||||||||||||||||||||| || ||||||||||||| |||||||||||    
T  243296 gatgaataatgagtgagagagcttctgccagatttgtaacagaagatcctcgacagttaactgc 243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 184
Target Start/End: Complemental strand, 28081508 - 28081387
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 162  Q
    |||||||||||||||||||| ||||||||||||||||  ||| ||||||| ||| |||  |||||| ||||||||  ||||| | ||||||||  || ||    
T  28081508 tcctcggcagttaactgcagtcggatttctaaaacttcggcagttaactgccgaagggcaaaaacgccatttactcgtgtggtacagccttatcaaatgt 28081409  T
Q  163 ggaaatagcaattctcaaaatg 184  Q
    | ||| || |||||||||||||    
T  28081408 gtaaacagtaattctcaaaatg 28081387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 1042056 - 1041996
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||| |||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||    
T  1042056 atgaacaatgaatgagagagcttatgccagatttgtagtagaagatcctcggcagttaact 1041996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 40354548 - 40354626
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgcagccggattt 92  Q
    |||||||||||||||||||| || |||||||||||||   | |||| ||||||||||||| ||||||||||||||||||    
T  40354548 agatgaataatggatgagaggagattctgccagattttgtagagcataagatcctcggcaattaactgcagccggattt 40354626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 44674214 - 44674099
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 162  Q
    |||||||||||||||||||||||| ||||| ||||||  ||| ||||||| | |||||  |||||||||||||||  ||||||| | ||||||| || ||    
T  44674214 tcctcggcagttaactgcagccgggtttcttaaacttcggcagttaactgccaaggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatgt 44674115  T
Q  163 ggaaatagcaattctc 178  Q
    || || | ||||||||    
T  44674114 gggaacaacaattctc 44674099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 28081582 - 28081519
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||||| || ||||||    
T  28081582 agatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcgacacttaact 28081519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 4786296 - 4786345
Alignment:
Q  30 gatgagagagcttctgccagatttatagcagaagatcctcggcagttaac 79  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  4786296 gatgagagagcttctaccagatttgtagcagaagatcatcggcagttaac 4786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 21022911 - 21022968
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  21022911 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 21022968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 29700268 - 29700314
Alignment:
Q  34 agagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||| |||||||||||| |||||| ||||||    
T  29700268 agagagcttctgccagatttgtagcagaagatcatcggcaattaact 29700314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 40833633 - 40833690
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  40833633 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 40833690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 28084012 - 28084049
Alignment:
Q  64 atcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||||| |||||||||||||||    
T  28084012 atcctcggcagttaactgcagctggatttctaaaactt 28084049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 14200611 - 14200575
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  14200611 tcctcggcagttaactgcagccgtatttctaaaactt 14200575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 21017951 - 21018018
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagatttatagc--agaagatcctcggcagttaactgc 82  Q
    ||||||||||| |||||||| || ||||||||||||| ||||  |||||||| |||||||||||||||    
T  21017951 agatgaataatagatgagaggagattctgccagatttgtagctcagaagatcatcggcagttaactgc 21018018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 38369205 - 38369241
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38369205 tcctcggcagttaactgcagccgtatttctaaaactt 38369241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 46254471 - 46254507
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46254471 tcctcggcagttaactgcagccgtatttctaaaactt 46254507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 50274810 - 50274747
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 126  Q
    ||||||||||||||||||||||||||||||||  | |  ||| ||||||| |||||||||||||    
T  50274810 tcctcggcagttaactgcagccggatttctaattcctcggcagttaactgccgagggggcaaaa 50274747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 51492121 - 51492085
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||| ||||||||||||||||||||||||||||||||    
T  51492121 tcctaggcagttaactgcagccggatttctaaaactt 51492085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 55794047 - 55793981
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||    
T  55794047 agatgaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaact 55793981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 50278821 - 50278852
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaa 96  Q
    ||||||||||||||||||||||||||||||||    
T  50278821 tcctcggcagttaactgcagccggatttctaa 50278852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 49892418 - 49892483
Alignment:
Q  85 ccggatttctaaaacttg--catttaactgtcgagggggcaaaacgtcatttacttatgtggcaga 148  Q
    |||||||||||||||||   ||||||||||||||||||  ||||||||| |||||  |||||||||    
T  49892418 ccggatttctaaaacttcaacatttaactgtcgaggggcaaaaacgtcaattactcgtgtggcaga 49892483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 23220725 - 23220692
Alignment:
Q  68 tcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||| |||||||||||||    
T  23220725 tcggcagttaactgcagccgtatttctaaaactt 23220692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 51037491 - 51037547
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggg 119  Q
    |||||||||||||| |||||||| |||||||||||||  ||| ||||||| ||||||    
T  51037491 tcctcggcagttaattgcagccgtatttctaaaacttcggcagttaactgccgaggg 51037547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 3403897 - 3403869
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  3403897 tcctcggcagttaactgcagccggatttc 3403869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 6178056 - 6178122
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaact 80  Q
    |||| ||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||    
T  6178056 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaact 6178122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 7485684 - 7485720
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||| |||||||| |||||||||||||    
T  7485684 tcctcggcagttaattgcagccgtatttctaaaactt 7485720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 9890044 - 9890016
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  9890044 tcctcggcagttaactgcagccggatttc 9890016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 11287593 - 11287557
Alignment:
Q  23 aataatggatgagagagcttctgccagatttatagca 59  Q
    |||||||||||||||||||||||||| |||| |||||    
T  11287593 aataatggatgagagagcttctgccacatttgtagca 11287557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 15995772 - 15995744
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  15995772 tcctcggcagttaactgcagccggatttc 15995744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 19069237 - 19069209
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  19069237 tcctcggcagttaactgcagccggatttc 19069209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 19073678 - 19073706
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  19073678 tcctcggcagttaactgcagccggatttc 19073706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 83
Target Start/End: Complemental strand, 37865228 - 37865200
Alignment:
Q  55 tagcagaagatcctcggcagttaactgca 83  Q
    |||||||||||||||||||||||||||||    
T  37865228 tagcagaagatcctcggcagttaactgca 37865200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 49094211 - 49094145
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaact 80  Q
    |||| ||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||    
T  49094211 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaact 49094145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 49889733 - 49889697
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||| || ||||||||||||||    
T  49889733 tcctcggcagttaactgcaaccagatttctaaaactt 49889697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 51036553 - 51036517
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||| |||||| |||||||||||||    
T  51036553 tcctcggcagttaactacagccgtatttctaaaactt 51036517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 21188374 - 21188446
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccgg 88  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21188374 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcagccgg 21188446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 34139996 - 34139916
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccggatttctaa 96  Q
    ||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  34139996 tgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagccggatttctaa 34139916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 30355189 - 30355251
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30355189 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 30355251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 40587786 - 40587722
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  40587786 tgagatgaataatggatgagagagcttctttcagatttatagcataagatcctcggcagttaact 40587722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 41047902 - 41047838
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  41047902 tgagatgaataatggatgagagagcttcctccagatttgtagcagaagatcctcggcagttaact 41047838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 46863292 - 46863356
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||    
T  46863292 tgagatgaataatggatgaaagagcttctgccagatttgtagcagaagatcttcggcagttaact 46863356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 28980123 - 28980184
Alignment:
Q  19 gatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  28980123 gatgaataatggatgagagagcttctgtcagatttgtagcagaaaatcctcggcagttaact 28980184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 36394886 - 36394950
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  36394886 tgagattaataacggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 36394950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 42682119 - 42682057
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    ||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||    
T  42682119 tgagatgaataatggatgagagaacttatgctagatttgtagcagaagatcctcggcagttaa 42682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 46738850 - 46738733
Alignment:
Q  67 ctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacgtg 163  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||| |||| |||| |||||||||||| ||  ||||||| | ||||||| || |||    
T  46738850 ctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagagggcaaaaacgtcatttgctcgtgtggcacaaccttatgtaatgtg 46738751  T
Q  164 gaaatagcaattctcaaa 181  Q
    | || | |||||||||||    
T  46738750 ggaacaacaattctcaaa 46738733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 17838776 - 17838711
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||    
T  17838776 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcgtcggcagttaact 17838711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 28115480 - 28115544
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||  |||||||||    
T  28115480 tgagatgaataatggatgagagagcttatgctagatttgtagcagaagaccctcaacagttaact 28115544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 43686859 - 43686919
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||| || ||||||| |||||||| || ||||||||||||||    
T  43686859 atgaataatggatgagagagcttatgtcagatttgtagcagaaaattctcggcagttaact 43686919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 48269766 - 48269710
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggc 72  Q
    ||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||    
T  48269766 tgagatgaataatggatgagagaacttttgtcagatttgtagcagaagatcctcggc 48269710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 45364168 - 45364227
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagt 75  Q
    ||||||||||||| ||| ||||||||||| |||||||| |||| ||||||||||||||||    
T  45364168 tgagatgaataatagataagagagcttctaccagatttgtagccgaagatcctcggcagt 45364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 27657088 - 27657031
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  27657088 tcctcggcagttaactgcagccgtatttctaaaactttggcagttaactgccgagggg 27657031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 7119 - 7083
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7119 tcctcggcagttaactgcagccgtatttctaaaactt 7083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 8070 - 8106
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  8070 tcctcggcagttaactgcagccgtatttctaaaactt 8106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 17840913 - 17840949
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||| ||||||||||||||||    
T  17840913 tcctcggcagttaactgcagtcggatttctaaaactt 17840949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 42583083 - 42583119
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42583083 tcctcggcagttaactgcagccgtatttctaaaactt 42583119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 46908496 - 46908532
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46908496 tcctcggcagttaactgcagccgtatttctaaaactt 46908532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 36185640 - 36185695
Alignment:
Q  123 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 178  Q
    |||||||||||||||  ||||||| ||||||||| || ||||||| ||||||||||    
T  36185640 aaaacgtcatttactcgtgtggcacagccttatgtaatgtggaaacagcaattctc 36185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 40323715 - 40323770
Alignment:
Q  123 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 178  Q
    |||||||||||||||| ||||||| ||||||||| || |||| || ||||||||||    
T  40323715 aaaacgtcatttacttgtgtggcacagccttatgtaatgtgggaacagcaattctc 40323770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 48316259 - 48316294
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagattt 53  Q
    |||| |||||||||||||||||||||||||||||||    
T  48316259 agattaataatggatgagagagcttctgccagattt 48316294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 12210613 - 12210670
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    |||||||||||||||||| |||| |||||||||||||  ||| ||||||| |||||||    
T  12210613 tcctcggcagttaactgcggccgtatttctaaaacttcggcagttaactgccgagggg 12210670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 45258027 - 45258084
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaact--tgcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||| |  |||| ||||||| |||||||    
T  45258027 tcctcggcagttaactgcagccgtatttctaaaatttatgcagttaactgccgagggg 45258084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 618748 - 618776
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  618748 tcctcggcagttaactgcagccggatttc 618776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 17838700 - 17838664
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  17838700 tcctcggtagtttactgcagccggatttctaaaactt 17838664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 29061395 - 29061283
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgt 113  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| ||||||||  | |  ||| |||||||     
T  29061395 tgagatgaataatggatgagagagcttctaccagatttgtagcagaagatcctcggaagttaactgcagccgaatttctaattcctcggcagttaactgc 29061296  T
Q  114 cgagggggcaaaa 126  Q
    |||||||||||||    
T  29061295 cgagggggcaaaa 29061283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 12783905 - 12783969
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  12783905 tgagatgaataatggatgagagagctttttccagatttgtagcagaagatcctcggcagttaact 12783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 32034340 - 32034412
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccgg 88  Q
    ||||| ||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||    
T  32034340 tgagacgaataatggataagagatcttctgccagatttgtagcagaagatcatcggcagttaactgcagccgg 32034412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29065853 - 29065791
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29065853 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29065791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29074866 - 29074804
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29074866 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29074804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29079630 - 29079568
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29079630 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29079568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29107439 - 29107377
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29107439 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 29076346 - 29076462
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||| |||||||||||||||||||||||||||||||   || ||||||| ||| ||||| ||||||||| |||||| |||| || ||||||||||||||    
T  29076346 tcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacg 29076445  T
Q  162 tggaaatagcaattctc 178  Q
    ||| || | ||||||||    
T  29076446 tgggaacaacaattctc 29076462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 29109879 - 29109995
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||| |||||||||||||||||||||||||||||||   || ||||||| ||| ||||| ||||||||| |||||| |||| || ||||||||||||||    
T  29109879 tcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacg 29109978  T
Q  162 tggaaatagcaattctc 178  Q
    ||| || | ||||||||    
T  29109979 tgggaacaacaattctc 29109995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 29111319 - 29111435
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||| |||||||||||||||||||||||||||||||   || ||||||| ||| ||||| ||||||||| |||||| |||| || ||||||||||||||    
T  29111319 tcctcagcagttaactgcagccggatttctaaaacttcgacagttaactgccgaaggggcaaaaacgtcaattacttgtgtgccacagccttatgcaacg 29111418  T
Q  162 tggaaatagcaattctc 178  Q
    ||| || | ||||||||    
T  29111419 tgggaacaacaattctc 29111435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 13401611 - 13401547
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||||||||    
T  13401611 tgagatgaataatggatgagagagcttctgtcatatttgtagcagaagatcctcggtagttaact 13401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 14012398 - 14012517
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 162  Q
    ||||||||||||||||| |||||||||||||||||||  ||| |||||||  || |||  |||||||||||||||  ||||||| ||||||||  || ||    
T  14012398 tcctcggcagttaactgaagccggatttctaaaacttcggcagttaactgctgaagggcaaaaacgtcatttactcgtgtggcacagccttattaaatgt 14012497  T
Q  163 ggaaatagcaattctcaaaa 182  Q
    || || | ||||||||||||    
T  14012498 gggaacaacaattctcaaaa 14012517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 17596764 - 17596831
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttat---agcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||| || ||||||    
T  17596764 tgagatgaataatggatgagatagcttctgccagatttatagcagcagaagatcctcgacaattaact 17596831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 11840273 - 11840389
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||| |||||||||||||||| |||||||||||||  ||| ||||||  | ||||||| ||||| ||| |||||  |||| || |||||||||||| |    
T  11840273 tcctcgacagttaactgcagccgaatttctaaaacttcggcagttaactaccaagggggcaaaaacatcaattactcgtgtgtcacagccttatgcaatg 11840372  T
Q  162 tggaaatagcaattctc 178  Q
    ||| || | ||||||||    
T  11840373 tgggaacaacaattctc 11840389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 26856013 - 26855976
Alignment:
Q  23 aataatggatgagagagcttctgccagatttatagcag 60  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  26856013 aataatggatgagagagcttctgccagatttgtagcag 26855976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 2109567 - 2109531
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  2109567 tcctcggcagttaactgcagccgtatttctaaaactt 2109531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 15888823 - 15888859
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||||||| ||||||||||||    
T  15888823 tcctcggcagttaactgcagccggttttctaaaactt 15888859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 28362818 - 28362873
Alignment:
Q  123 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctc 178  Q
    |||||||||||||||  ||||||| ||||||||| || |||| |||||||||||||    
T  28362818 aaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaatagcaattctc 28362873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 30258263 - 30258329
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagattt--atagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||  |||||||   |||| ||||||  |||||||||||||||    
T  30258263 agatgaataatggatgagagagcttctctcagattttcgtagctgaagattatcggcagttaactgc 30258329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 31771764 - 31771795
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaa 96  Q
    ||||||||||||||||||||||||||||||||    
T  31771764 tcctcggcagttaactgcagccggatttctaa 31771795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 25554755 - 25554698
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    |||| |||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  25554755 tcctaggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 25554698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 6204954 - 6204888
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaact 80  Q
    |||| ||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||    
T  6204954 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaact 6204888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 6760895 - 6760931
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  6760895 tcctcggcaattaactgcagccgtatttctaaaactt 6760931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 11687976 - 11688032
Alignment:
Q  123 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctca 179  Q
    |||||||||||||||  ||||||| ||||||||| || |||| || |||||||||||    
T  11687976 aaaacgtcatttactcgtgtggcacagccttatgtaatgtgggaacagcaattctca 11688032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 11691921 - 11691855
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaact 80  Q
    |||| ||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||    
T  11691921 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaact 11691855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 18347091 - 18347063
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  18347091 tcctcggcagttaactgcagccggatttc 18347063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 28362754 - 28362782
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  28362754 tcctcggcagttaactgcagccggatttc 28362782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 34634317 - 34634281
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatt 52  Q
    |||||| |||||||||||||||||||||||| |||||    
T  34634317 tgagataaataatggatgagagagcttctgctagatt 34634281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 921 - 841
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccggatttctaa 96  Q
    ||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  921 tgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgcagccggatttctaa 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 7757375 - 7757259
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||| |||||||||||||||  ||||||| || |||||| || |    
T  7757375 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgagggggcaaaaacgtcatttactcgtgtggcatagtcttatgtaatg 7757276  T
Q  162 tggaaatagcaattctc 178  Q
    ||| || ||||||||||    
T  7757275 tgggaacagcaattctc 7757259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 42865754 - 42865824
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcagccgg 88  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  42865754 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcaattaactgcaaccgg 42865824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 542738 - 542802
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  542738 tgagatgaataatggatgagagaacttctgccagatttgtagcagaagatcctcggcagttaact 542802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 18307379 - 18307315
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  18307379 tgagatgaataatggatgagagggcttctgccagatttgtagcagaagatcctcggcagttaact 18307315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 25497636 - 25497572
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  25497636 tgagatgaataatggatgagagagcttctgcctgatttgtagcagaagattctcggcagttaact 25497572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 43094599 - 43094715
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcga-gggggcaaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||| ||||  |||||||||||||||  ||||||| | ||||||  || |    
T  43094599 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgtcgatggggtaaaaacgtcatttactcgtgtggcataaccttatcaaatg 43094698  T
Q  162 tggaaatagcaattctc 178  Q
    || ||| ||||||||||    
T  43094699 tgtaaacagcaattctc 43094715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 35564386 - 35564322
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||| |||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  35564386 tgaggtgaataatggatgagagagcttatgccagatttgtagcagaagatcctcagcagttaact 35564322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 11346057 - 11345965
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttat 155  Q
    ||||||||||||||||||||| |||||||||||||||  ||| ||||||||| |  ||  |||||||||||||||| ||||||| ||||||||    
T  11346057 tcctcggcagttaactgcagctggatttctaaaacttcggcagttaactgtcaaaaggcaaaaacgtcatttacttgtgtggcacagccttat 11345965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 11346133 - 11346068
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |||||||||    
T  11346133 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcgacagttaact 11346068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 7762267 - 7762382
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 162  Q
    |||||| |||||||||||| ||| |||||||||||||  ||| ||||||| |||||||  ||||||||| |||||  ||||||| ||||||||| || ||    
T  7762267 tcctcgacagttaactgcaaccgaatttctaaaacttcggcagttaactgccgaggggcaaaaacgtcaattactcgtgtggcacagccttatgtaatgt 7762366  T
Q  163 ggaaatagcaattctc 178  Q
    || || ||||||||||    
T  7762367 gggaacagcaattctc 7762382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 20192464 - 20192414
Alignment:
Q  30 gatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  20192464 gatgagagagcttctgccagatttgtagcagaagatcctcggcatttaact 20192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 8537291 - 8537226
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||||||||||    
T  8537291 tgagatgaataatggatgagaggagattctggcagatttgtagcagaacatcctcggcagttaact 8537226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 3600462 - 3600398
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||| |||| ||| |||||| ||||||| |||||||||||||||||| |||||||    
T  3600462 tgagatgaataatgcatgaaagaacttctgtcagatttgtagcagaagatcctcggctgttaact 3600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 8539539 - 8539596
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||    
T  8539539 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggg 8539596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 8576916 - 8576994
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgcagccggattt 92  Q
    ||||||||||||| |||||| || |||||||||||||   |  |||||||||||| |||||||||||||||||||||||    
T  8576916 agatgaataatgggtgagaggagattctgccagattttgtagcgcagaagatccttggcagttaactgcagccggattt 8576994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 3891533 - 3891476
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  3891533 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 3891476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 1401388 - 1401425
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagattt 53  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1401388 tgagatgaataatggatgagagagcttctgctagattt 1401425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 43094053 - 43093965
Alignment:
Q  70 ggcagttaactgcagccggatttctaaaactt--gcatttaactgtcg-agggggcaaaacgtcatttacttatgtggcagagccttat 155  Q
    ||||||||||||||||||||||||||||| ||  ||| |||||||| | |||||  |||||||||||||||  |||| || ||||||||    
T  43094053 ggcagttaactgcagccggatttctaaaatttcggcagttaactgttgaaggggtaaaaacgtcatttactcgtgtgacacagccttat 43093965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 11348498 - 11348534
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||| |||||||||||||||||    
T  11348498 tcctcggcagttaactgcatccggatttctaaaactt 11348534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 30887383 - 30887414
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaa 96  Q
    ||||||||||||||||||||||||||||||||    
T  30887383 tcctcggcagttaactgcagccggatttctaa 30887414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 1397376 - 1397436
Alignment:
Q  68 tcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 126  Q
    |||||||||||||||||||||||||||||  | |  ||| ||||||| |||||||||||||    
T  1397376 tcggcagttaactgcagccggatttctaattcctcagcagttaactgccgagggggcaaaa 1397436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 13568098 - 13568218
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcga-gggggcaaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||||||||||||||||||||||||||| ||  | |  ||| ||||||  ||| ||||  |||||||||||||||  | ||||| ||||||||| || |    
T  13568098 tcctcggcagttaactgcagccggatttcaaattcctcggcagttaactaccgatggggtaaaaacgtcatttactcgtatggcacagccttatgtaatg 13568197  T
Q  162 tggaaatagcaattctcaaaa 182  Q
    ||| || | ||||||||||||    
T  13568198 tgggaacaacaattctcaaaa 13568218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 41798865 - 41798805
Alignment:
Q  68 tcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 126  Q
    |||||||||||||||||||||||||| ||  |||  ||| ||||||| |||||||||||||    
T  41798865 tcggcagttaactgcagccggatttcaaattcttcagcagttaactgccgagggggcaaaa 41798805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 14686 - 14722
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||| |||||| |||||||||||||    
T  14686 tcctcggcagttaactacagccgtatttctaaaactt 14722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 7021881 - 7021909
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  7021881 tcctcggcagttaactgcagccggatttc 7021909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 19037416 - 19037482
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaact 80  Q
    |||| ||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||    
T  19037416 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaact 19037482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 27662152 - 27662230
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgcagccggattt 92  Q
    |||| ||||||||||||||| || |||||||||||||   |  ||| |||||||||||||||||||| ||||| |||||    
T  27662152 agatcaataatggatgagaggagattctgccagattttgtagcgcataagatcctcggcagttaacttcagcctgattt 27662230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 34122574 - 34122546
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  34122574 tcctcggcagttaactgcagccggatttc 34122546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 37820877 - 37820905
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  37820877 tcctcggcagttaactgcagccggatttc 37820905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 58)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 34694382 - 34694446
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34694382 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 34694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 19454299 - 19454366
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgca 83  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  19454299 tgagatgaataatggatgagagagcttctgccagatttgtagtagaagatcctcggcagttaactgca 19454366  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 55207613 - 55207675
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55207613 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 55207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 51696522 - 51696586
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  51696522 tgagatgaataatggatgagagagcttctgccagatttgcagcagaagatcctcggcagttaact 51696586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 41803121 - 41803059
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  41803121 agatgaataatggatgagagagcttctgccagatttgtagcaaaagatcctcggcagttaact 41803059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 51402348 - 51402410
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  51402348 agatgaataatggatgagagagcttctgacagatttgtagcagaagatcctcggcagttaact 51402410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 43476317 - 43476253
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  43476317 tgagatgaataatggatgagagagcttctgtcagatttgtagcaaaagatcctcggcagttaact 43476253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 45101796 - 45101860
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45101796 tgagatgaataatatatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 45101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 55385262 - 55385198
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  55385262 tgagattaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaact 55385198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 7245217 - 7245155
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||    
T  7245217 tgagatgaataatggatgagagagcttctgtcagatttgtagcagaagatactcggcagttaa 7245155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 13896824 - 13896888
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||    
T  13896824 tgagatgaataatggatgagagagcttctgccagatttgtagtagaaaatcttcggcagttaact 13896888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 41137829 - 41137773
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagtt 76  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  41137829 atgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtagtt 41137773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 41577200 - 41577140
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagtt 76  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  41577200 tgagatggataatggatgagagagcttctgcaagatttgtagcagaagatcctcggcagtt 41577140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 43568991 - 43568927
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||| ||||||| || |||||||||||| ||||||||||    
T  43568991 tgagatgaataatggatgagagagcttctgtcagatttgtaacagaagatcctcagcagttaact 43568927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 52570514 - 52570578
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||    
T  52570514 tgagatgaataatgaatgagagagtttctgccagatttgtagtagaagatcctcggcagttaact 52570578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 55385187 - 55385085
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||| ||||||||| |||||  |||| || | |||||||||| |    
T  55385187 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgagggggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatg 55385088  T
Q  162 tgg 164  Q
    |||    
T  55385087 tgg 55385085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 16647170 - 16647287
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||||||||||||||||||||||||||||||||| |  ||| ||||||| ||||||||| |||||||||  ||||  |||| |||| |||||||||| |    
T  16647170 tcctcggcagttaactgcagccggatttctaaaacatcggcagttaactgccgagggggcaaaaacgtcaagtactcgtgtgccagaaccttatgcaatg 16647269  T
Q  162 tggaaatagcaattctca 179  Q
    ||| || | |||||||||    
T  16647270 tgggaacaacaattctca 16647287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 2271260 - 2271325
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||| ||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  2271260 tgagatgaattatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaact 2271325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 24703374 - 24703427
Alignment:
Q  27 atggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  24703374 atggatgagagagcttctgccagatttgtagcagaagatcatcggcagttaact 24703427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 36134449 - 36134384
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||| |||| || ||||||||||||| ||||||||||||||||||||||||||    
T  36134449 tgagatgaataatggataagaggagattctgccagatttgtagcagaagatcctcggcagttaact 36134384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 43478853 - 43478969
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||| | ||||| |||||||||  ||||||| | ||||||| || |    
T  43478853 tcctcggcagttaactgcagccggatttctaaaacttcagcagttaactgccgaggggacaaaaacatcatttactcgtgtggcacaaccttatgtaatg 43478952  T
Q  162 tggaaatagcaattctc 178  Q
    ||| || | ||||||||    
T  43478953 tgggaacaacaattctc 43478969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 49609508 - 49609444
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  49609508 tgagatgaataatgaataagagagcttatgccagatttgtagcagaagttcctcggcagttaact 49609444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 4004750 - 4004813
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||    
T  4004750 tgagatgaataatggatgagaggagattctgccaggtttgtagcagaagatcctcggcagttaa 4004813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 2426609 - 2426559
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatc 66  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  2426609 tgagatgaataatgaatgagagagcttctgccaaatttatagcagaagatc 2426559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 43476242 - 43476147
Alignment:
Q  65 tcctcggcagttaactgcagccgga-tttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatg 156  Q
    ||||||||||||||||||||||||| ||||||||||||  ||| ||||||  ||||||||| |||||||||||||||  ||||||| | |||||||    
T  43476242 tcctcggcagttaactgcagccggattttctaaaacttcggcagttaacttccgagggggcaaaaacgtcatttactcgtgtggcacaaccttatg 43476147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 46402483 - 46402405
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgcagccggattt 92  Q
    |||| ||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||||||||||||||    
T  46402483 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactgcagccggattt 46402405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 48246462 - 48246399
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa 126  Q
    |||||| ||||||||||||||||||||||||||||||  ||| ||||||| |||||||||||||    
T  48246462 tcctcgacagttaactgcagccggatttctaaaacttcagcagttaactgccgagggggcaaaa 48246399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 49219739 - 49219803
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||| ||||||||||| || |||| ||||||||||||||||  ||||||||    
T  49219739 tgagatgaataatggatgggagagcttctgtcaaatttgtagcagaagatcctcgatagttaact 49219803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 48250892 - 48251009
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa-cgtcatttacttatgtggcagagccttatgcaacg 161  Q
    ||||||||||||||||||||||||| ||| ||  | |  ||| ||||||| ||||||||||||| ||||||||| |||||||||| | ||||||| || |    
T  48250892 tcctcggcagttaactgcagccggaattcaaattcctcagcagttaactgccgagggggcaaaaacgtcatttatttatgtggcacaaccttatgtaatg 48250991  T
Q  162 tggaaatagcaattctca 179  Q
    ||| || | |||||||||    
T  48250992 tgggaacaacaattctca 48251009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 182
Target Start/End: Original strand, 600567 - 600687
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||| ||||||||||| |||||||||| |||||||  ||| |||||||||||||| || |||||||||||||||  |||| |  |||||| | ||| |    
T  600567 tcctcgacagttaactgcggccggatttccaaaacttcggcagttaactgtcgagggcgcaaaaacgtcatttactcgtgtgccgcagccttctacaatg 600666  T
Q  162 tggaaatagcaattctcaaaa 182  Q
    ||| || | ||||||||||||    
T  600667 tgggaacaacaattctcaaaa 600687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 34648150 - 34648218
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccaga--tttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||| ||||||||| ||| || |||||    
T  34648150 tgagatgaataatggatgagagagcttctgccagaattttgtagcataagatcctcagcaatttactgc 34648218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 4002790 - 4002754
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||||||||||||||||||||    
T  4002790 tcctcggcagttaactgcagccggatttctaaaactt 4002754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 4004826 - 4004862
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||||||||||||||||||||    
T  4004826 tcctcggcagttaactgcagccggatttctaaaactt 4004862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 101
Target Start/End: Original strand, 2271337 - 2271372
Alignment:
Q  66 cctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||||||||||||||||    
T  2271337 cctcggcagttaactgcagccggatttctaaaactt 2271372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 28817024 - 28817081
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  28817024 tcctcggcagttaactgcagccgtatttctaaaactttggcagttaactgccgagggg 28817081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 34543159 - 34543215
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggg 119  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| ||||||    
T  34543159 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgaggg 34543215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 12897874 - 12897838
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12897874 tcctcggcagttaactgcagccgtatttctaaaactt 12897838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 27739590 - 27739626
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  27739590 tcctcggcagttaactgcagccgtatttctaaaactt 27739626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 36134373 - 36134337
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||| ||||||||||||||||    
T  36134373 tcctcggcagttaactgcagacggatttctaaaactt 36134337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 46347672 - 46347731
Alignment:
Q  19 gatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||| |||||||||||||| |||| || ||||| |||||||||||| ||| |||||||    
T  46347672 gatgaacaatggatgagagagtttctccctgatttgtagcagaagatcttcgacagttaa 46347731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 49219814 - 49219845
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaa 96  Q
    ||||||||||||||||||||||||||||||||    
T  49219814 tcctcggcagttaactgcagccggatttctaa 49219845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 50998706 - 50998760
Alignment:
Q  68 tcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||||| ||||||||  ||| ||||||| |||||||    
T  50998706 tcggcagttaactgcagccggatttataaaacttcggcagttaactgccgagggg 50998760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 2267080 - 2267023
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||| |||||||||||||||||| ||||||||||   || |||||||||||||||    
T  2267080 tcctcggtagttaactgcagccggatatctaaaacttcgacaattaactgtcgagggg 2267023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 18436797 - 18436767
Alignment:
Q  23 aataatggatgagagagcttctgccagattt 53  Q
    |||||||||||||||||||||||||||||||    
T  18436797 aataatggatgagagagcttctgccagattt 18436767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 5138333 - 5138410
Alignment:
Q  106 ttaactgtcgagggggcaaaa-cgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctcaaaa 182  Q
    ||||||||||  ||||||||| |||||||||||  ||||||| |||||||||  | |||| || ||||||||||||||    
T  5138333 ttaactgtcgtaggggcaaaaacgtcatttactcgtgtggcacagccttatgtcatgtgggaacagcaattctcaaaa 5138410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 16484479 - 16484512
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaa 98  Q
    ||||||||||||||||||||||||||| ||||||    
T  16484479 tcctcggcagttaactgcagccggattactaaaa 16484512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 19750091 - 19750035
Alignment:
Q  66 cctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    |||||||||||||||||||||| |||||||||| ||  ||| ||||||| |||||||    
T  19750091 cctcggcagttaactgcagccgtatttctaaaatttcggcagttaactgccgagggg 19750035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 2743448 - 2743420
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  2743448 tcctcggcagttaactgcagccggatttc 2743420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 4002528 - 4002556
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  4002528 tcctcggcagttaactgcagccggatttc 4002556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 10492077 - 10492041
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||| |||||||||||||||| |||||||||||||    
T  10492077 tcctcgtcagttaactgcagccgtatttctaaaactt 10492041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 11249547 - 11249583
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||  |||||||||||||    
T  11249547 tcctcggcagttaactgcagccatatttctaaaactt 11249583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 13743343 - 13743315
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  13743343 tcctcggcagttaactgcagccggatttc 13743315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 14043921 - 14043957
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    |||||||||||||||||||||||  ||||||||||||    
T  14043921 tcctcggcagttaactgcagccgattttctaaaactt 14043957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 19988507 - 19988452
Alignment:
Q  67 ctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||| ||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  19988507 ctcggcagtcaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 19988452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 20366313 - 20366253
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||| |||||| ||||||||  |||||| ||| |||||||||||| || ||||||    
T  20366313 atgaataatgaatgagaaagcttctggtagatttgtagtagaagatcctcgacaattaact 20366253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 24703438 - 24703474
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  24703438 tcctcggcagttaactgcatccgaatttctaaaactt 24703474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 50953352 - 50953324
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  50953352 tcctcggcagttaactgcagccggatttc 50953324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 50957689 - 50957717
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  50957689 tcctcggcagttaactgcagccggatttc 50957717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 2920464 - 2920528
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2920464 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 2920528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 24512292 - 24512228
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24512292 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 24512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 43491234 - 43491170
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  43491234 tgagatgaataatggatgagagagcttctgccagatttataacagaagattctcggcagttaact 43491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 41500184 - 41500246
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  41500184 agatgaataatggatgagagagcttatgccagatttgtagcagaagatcctcggcagttaact 41500246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 40679545 - 40679608
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaac 79  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  40679545 tgagatgaataatggatgagagaggttcttccagatttgtagcagaagatcctcggcagttaac 40679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 7189974 - 7190089
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 162  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||| |||||||  ||||||| |||||||  ||||||| | ||||||| || ||    
T  7189974 tcctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgaggggcaaaaacgtaatttactcgtgtggcacaaccttatgtaatgt 7190073  T
Q  163 ggaaatagcaattctc 178  Q
    || || | ||||||||    
T  7190074 gggaacatcaattctc 7190089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 23347351 - 23347466
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttatgcaacgt 162  Q
    ||||||| |||||||||||||||||||||||||||||  ||| ||||||| ||| |||  |||||||||||||||  ||||||| ||||||||  || ||    
T  23347351 tcctcggtagttaactgcagccggatttctaaaacttcggcagttaactgccgaagggcaaaaacgtcatttactcgtgtggcacagccttatcaaatgt 23347450  T
Q  163 ggaaatagcaattctc 178  Q
    | ||| ||||||||||    
T  23347451 gtaaacagcaattctc 23347466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 29093779 - 29093842
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||   |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29093779 tgagatgaataat---tgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgc 29093842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 3943217 - 3943307
Alignment:
Q  67 ctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttat 155  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||| ||||| |  |||||||||||||||  ||||||| ||||||||    
T  3943217 ctcggcagttaactgcagccggatttctaaaacttcggcagttaactgccgaggagcaaaaacgtcatttactcgtgtggcatagccttat 3943307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 2648242 - 2648178
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||| ||||||    
T  2648242 tgagatgaataattgatgagagagtttctgccagatttgtagcagaagatcatcggcaattaact 2648178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 39393162 - 39393098
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||  ||||||| ||| |||||||||||| |||||||||    
T  39393162 tgagatgaataatggatgagagagcttctatcagatttgtagtagaagatcctcgacagttaact 39393098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 10365746 - 10365804
Alignment:
Q  22 gaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||    
T  10365746 gaataatggatgagagagcttatgccagatttgtagcaaaagatcctcggcatttaact 10365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 43870144 - 43870261
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggc-aaaacgtcatttacttatgtggcagagccttatgcaacg 161  Q
    |||||||||| ||||||||| ||||||||||||||||  ||| ||||||| ||| ||||| |||||||||||||||  ||||||| | ||||||| || |    
T  43870144 tcctcggcagctaactgcagtcggatttctaaaacttcggcagttaactgccgatggggcaaaaacgtcatttactcgtgtggcacaaccttatgtaatg 43870243  T
Q  162 tggaaatagcaattctca 179  Q
    ||| || | |||||||||    
T  43870244 tgggaacatcaattctca 43870261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 28472214 - 28472136
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgcagccggattt 92  Q
    |||||||||||||||||||| || |||||||||||||   |  ||||||||||||| ||||||||||||||||||||||    
T  28472214 agatgaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcagcagttaactgcagccggattt 28472136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 26858238 - 26858175
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaac 79  Q
    ||||||||||||| |||||||||  ||||| || |||| |||||||||||||||||||||||||    
T  26858238 tgagatgaataattgatgagagaatttctgtcacatttgtagcagaagatcctcggcagttaac 26858175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 28477090 - 28477147
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||||    
T  28477090 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgtcgagggg 28477147  T

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Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 34638262 - 34638201
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||||||| || ||||||    
T  34638262 tgagatgaataatggatgagagagcttct---agatttgtagcagaagatcctcgacaattaact 34638201  T

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Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 16580611 - 16580546
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactg 81  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||| ||||| | || |||||||    
T  16580611 tgagatgaataatggatgagagaacttttgccagatttgtagcagaaaatccttgacaattaactg 16580546  T

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Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 23346830 - 23346738
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaacgtcatttacttatgtggcagagccttat 155  Q
    |||| ||||||||||||||||||||||| ||||||||  ||| ||||||| ||| |||  |||||||||||||||  ||||||| | ||||||    
T  23346830 tccttggcagttaactgcagccggatttataaaacttcggcagttaactgccgaagggcaaaaacgtcatttactcgtgtggcacaaccttat 23346738  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 36510879 - 36510936
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggg 120  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| |||||||    
T  36510879 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgagggg 36510936  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 30803041 - 30803097
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt--gcatttaactgtcgaggg 119  Q
    ||||||||||||||||||||||| |||||||||||||  ||| ||||||| ||||||    
T  30803041 tcctcggcagttaactgcagccgtatttctaaaacttcggcagttaactgccgaggg 30803097  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 10425842 - 10425878
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||| |||||||||||||    
T  10425842 tcctcggcagttaactgcagccgtatttctaaaactt 10425878  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 39377690 - 39377626
Alignment:
Q  123 aaaacgtcatttacttatgtggcagagccttatgcaacgtggaaatagcaattctcaaaatgaaa 187  Q
    |||||||||||||||  ||||||| ||||||||| || ||||||| |||||||||| || |||||    
T  39377690 aaaacgtcatttactcgtgtggcacagccttatgtaatgtggaaacagcaattctcgaattgaaa 39377626  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 1096645 - 1096617
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  1096645 tcctcggcagttaactgcagccggatttc 1096617  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 3795387 - 3795359
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  3795387 tcctcggcagttaactgcagccggatttc 3795359  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 3803566 - 3803594
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  3803566 tcctcggcagttaactgcagccggatttc 3803594  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 10424889 - 10424853
Alignment:
Q  65 tcctcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  10424889 tcctcggcagttaactgtagccgtatttctaaaactt 10424853  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 20951069 - 20951097
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  20951069 tcctcggcagttaactgcagccggatttc 20951097  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 27276397 - 27276425
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  27276397 tcctcggcagttaactgcagccggatttc 27276425  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 38945812 - 38945784
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  38945812 tcctcggcagttaactgcagccggatttc 38945784  T

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Target: scaffold0192 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 18847 - 18911
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||    
T  18847 tgagatgaataatggatgagaaagcttctgccagatttgtagcagaagatcctcgacagttaact 18911  T

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Target: scaffold0199 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 12335 - 12400
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  12335 tgagatgaataatggatgagagtagattctgccagatttgtagcagaagatcctcggcagttaact 12400  T

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Target: scaffold0199; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 12414 - 12447
Alignment:
Q  68 tcggcagttaactgcagccggatttctaaaactt 101  Q
    ||||||||||||||||||||||||||||||||||    
T  12414 tcggcagttaactgcagccggatttctaaaactt 12447  T

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Target: scaffold0184 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 18323 - 18435
Alignment:
Q  72 cagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa-cgtcatttacttatgtggcagagccttatgcaacgtggaaat 168  Q
    |||| |||||||| ||||||||||||||||  ||| ||||| | ||| ||| ||||| ||||| |||||| |||| || | ||||||||||||||| ||     
T  18323 cagtaaactgcagtcggatttctaaaacttcggcagttaaccgccgaagggacaaaaacgtcaattacttgtgtgccacatccttatgcaacgtgggaac 18422  T
Q  169 agcaattctcaaa 181  Q
    | |||||||||||    
T  18423 aacaattctcaaa 18435  T

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Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 54521 - 54409
Alignment:
Q  72 cagttaactgcagccggatttctaaaactt--gcatttaactgtcgagggggcaaaa-cgtcatttacttatgtggcagagccttatgcaacgtggaaat 168  Q
    |||| |||||||| ||||||||||||||||  ||| ||||| | ||| ||| ||||| ||||| |||||| |||| || | ||||||||||||||| ||     
T  54521 cagtaaactgcagtcggatttctaaaacttcggcagttaaccgccgaagggacaaaaacgtcaattacttgtgtgccacatccttatgcaacgtgggaac 54422  T
Q  169 agcaattctcaaa 181  Q
    | |||||||||||    
T  54421 aacaattctcaaa 54409  T

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Target: scaffold0341 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 17374 - 17402
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  17374 tcctcggcagttaactgcagccggatttc 17402  T

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Target: scaffold0260 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 11830 - 11802
Alignment:
Q  65 tcctcggcagttaactgcagccggatttc 93  Q
    |||||||||||||||||||||||||||||    
T  11830 tcctcggcagttaactgcagccggatttc 11802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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