View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_47 (Length: 362)
Name: NF3582_high_47
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 341
Target Start/End: Original strand, 23836311 - 23836640
Alignment:
| Q |
11 |
caaaggacaaatacatacatggatatacttaagagacaaatttatattctagttttataaaggatttggattgagctttaattgttttatattataaaat |
110 |
Q |
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| T |
23836311 |
caaaggacaaatacacacatggatatacttaagagacat-tttatattctaattttataaaggatttggattgagctttaattgttttatattataaaat |
23836409 |
T |
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| Q |
111 |
gatgaaataatattccattaattacataaaaatgagaagacgaaaaatatgggtacaattcacaagtttttatatgctatgatcctatttattcatataa |
210 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23836410 |
gatgaaataatattccattgattacataaaaatgagaagaaataaaatatgggtacaattcacaagtttttatatgctatgatcctatttattcatataa |
23836509 |
T |
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| Q |
211 |
ctcttgttgtaagtggaaacttttttgaattctttcacaagtgcactcaggacagtgattgtccatctcttttatgtagaaacaagtctgaattaccaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23836510 |
ctcttgttgtaagtggaaacttttttgaattctttcacaagtgcactcaggacagtgattgtccatctcttttatgtagaaacaagtctgaattaccaaa |
23836609 |
T |
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| Q |
311 |
gtgtattgcggggttcatgtgtcgatgtcct |
341 |
Q |
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|||||||| |||||||||||||| |||||| |
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| T |
23836610 |
atgtattgctgggttcatgtgtcgttgtcct |
23836640 |
T |
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