View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_48 (Length: 361)
Name: NF3582_high_48
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 2265782 - 2265932
Alignment:
| Q |
1 |
ctcatctctatgaactcccactcagtgctgctcacctctccaccagctaacatttaacaaataacaaacattcaatatacattcatacaaggcatgtgtt |
100 |
Q |
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| T |
2265782 |
ctcatctctatgaactcccactcagtgctgctcacttctccaccagctaacatttaacaaataacaaacattcaatatacattcatacaaggcatgtgtt |
2265881 |
T |
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| Q |
101 |
cagttaattgctacacgtataaataattaaaaccataattgtctcagactt |
151 |
Q |
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| T |
2265882 |
cagttaattgctacacgtataaataattaaaaccataattgtctcagactt |
2265932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 246 - 344
Target Start/End: Original strand, 2266004 - 2266108
Alignment:
| Q |
246 |
tagattagaaaccaccttcagaggtttgacttgtgtttggggagatatttgccttattt------tgggaacgtcgtttttcttccatattttatctacc |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2266004 |
tagattagaaaccaccttcagaggtttgacttgtgtttggggagatatttgccttattttgggaatgggaacgtcgtttttcttccatattttatctacc |
2266103 |
T |
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| Q |
340 |
tgctg |
344 |
Q |
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||||| |
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| T |
2266104 |
tgctg |
2266108 |
T |
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