View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_50 (Length: 355)
Name: NF3582_high_50
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 46554947 - 46554627
Alignment:
| Q |
18 |
aacgtagcgctttcgcccttgtcgctccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggat |
117 |
Q |
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| T |
46554947 |
aacgtagtgttttcgcccttgtcactccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggat |
46554848 |
T |
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| Q |
118 |
cagaatccgtccaacatcttaactccttgtcctctcacctcgtttcccatgtgcttaaagacgctgctcccgccggtggtccttccttgtcttctgcata |
217 |
Q |
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| T |
46554847 |
cagaatccatccaccatcttaactccttgtcctctcacctcgtttcccatgtgcttaaagacgc-----------gtggtctttccttgtcttctgcata |
46554759 |
T |
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| Q |
218 |
cgctatttgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccactctccaatcacatgatttcattaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46554758 |
cgctatttgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctattaattataaggccactctccaatcacatgatttcattaac |
46554659 |
T |
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| Q |
318 |
aaggtaagttgttttatttttatttcttctct |
349 |
Q |
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| T |
46554658 |
aaggtaagttgttttatttttatttcttctct |
46554627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 323
Target Start/End: Original strand, 46531277 - 46531574
Alignment:
| Q |
26 |
gctttcgcccttgtcgctccaaactacgctcagtatggtcactgctggttccgagggtcccactcaacgtcagcttctctccttcctcggatcagaatcc |
125 |
Q |
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| T |
46531277 |
gctttcaccgttgtcactccaaactgtgctcagcatagtagctgccggttccgagggtccgacgcaatgtcagcttctctccttccttggttcaaaatcc |
46531376 |
T |
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| Q |
126 |
gtccaacatcttaactccttgtcctctcacctcgtttcccatgtgcttaaagacgctgctcccgccggtggtccttccttgtcttctgcatacgctattt |
225 |
Q |
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| T |
46531377 |
attgatcatctcaactccttatccactcacctctttacctctgtgcttgatgacgctgctccctttggtggaccacagttgtcttttgtcaactctgtgt |
46531476 |
T |
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| Q |
226 |
gggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccactctccaatcacatgatttcattaacaaggta |
323 |
Q |
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| T |
46531477 |
ggtttgaaaaatccctttctctttacccttccttcaaagaaattgttgatactaattattttgccactctcagatcacttgatttcataaacaaggta |
46531574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 293
Target Start/End: Original strand, 46469889 - 46469957
Alignment:
| Q |
225 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
293 |
Q |
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| T |
46469889 |
tgggttgatcaaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccact |
46469957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 46550190 - 46550126
Alignment:
| Q |
229 |
ttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggccact |
293 |
Q |
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| T |
46550190 |
ttgaacaaaccctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccact |
46550126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 9693292 - 9693228
Alignment:
| Q |
225 |
tgggttgaaaaaacgctttctctttacccttccttcaaagaaactattgctactaattataaggc |
289 |
Q |
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| T |
9693292 |
tgggtagagaaaaccctttctcttcaaccttccttcaaagaaaccatgtctactgattataaggc |
9693228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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