View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_52 (Length: 348)
Name: NF3582_high_52
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 35834590 - 35834913
Alignment:
| Q |
18 |
attccaaagaattgacattgatcgtggaggatcggcggcattacaaagaataacaagacatgatgaatttgaatccaagctaatagaagaataagagaaa |
117 |
Q |
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| T |
35834590 |
attccaaagaattcacattgatcgtggaggatcggcggcattacaaagaataacacgacatgatgaatttgaatccaaactaatagaagaataagagaaa |
35834689 |
T |
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| Q |
118 |
gtacgtacgtaccatggtagaggtctaagttggaagggttgtgtgagaaaattggttcatgaattgaagagaagaaaaaggaatcggtgacggttatgga |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834690 |
ttacgtacgtaccatggcagaggtctaagttggaagggttgtgtgagaaaattggttcatgaattgaagagaagaaaaaggaatcggtgacggttatgga |
35834789 |
T |
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| Q |
218 |
aatgttgaaagcgaaaagccatttttgatgaatttttgagagaaatgaaagtgaaagtgaatgcgattgaacattcttcaagcttgccttcaacttcggc |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
35834790 |
aatgttgaaagcgagaagccatttttgatgaatttttgagagaaatgaaagtgtaagtgaatgcgattcaacattcttcaagctggccttcaacttcggc |
35834889 |
T |
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| Q |
318 |
actttcttcctcttccctttgctt |
341 |
Q |
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|||||||||||||||||||||||| |
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| T |
35834890 |
actttcttcctcttccctttgctt |
35834913 |
T |
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