View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_high_59 (Length: 319)
Name: NF3582_high_59
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_59 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 51899066 - 51899369
Alignment:
| Q |
8 |
ttcttcttcttcgttgattcgatcagatagttgcttctcatcaatatctggttaagttctttagtttagactctttttgcagttggaggtaatgctaagc |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
51899066 |
ttcttcttcgtcgttgattcgatcagatagttgcttctcatcaatatctggttaagttctttagtttagactctttttgtagttggaggtaaagctaagc |
51899165 |
T |
|
| Q |
108 |
atgaaatgaaaactgaaacatagaaatgttannnnnnn--ctctgactgtgactaatgttgaaattgaaaaaggtctctttctctttatgttttgattga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51899166 |
atgaaatgaaaactgaaacatagaaatgttatttttttttctctgactgtgactaatgttgaaattgaaaaaggtctctttctctttatgttttgattga |
51899265 |
T |
|
| Q |
206 |
ttcatgatggatctgtaatcagtttccatgtgtttcactgttttagaattttaatgaggccagtctgatattaataactttagtgttagactttttcccc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51899266 |
ttcatgatggatctgtaatcagtttccatgtttttcactgttttagaattttcatgaggccagtctgatattaataactttagtgttagactttttcccc |
51899365 |
T |
|
| Q |
306 |
tatg |
309 |
Q |
| |
|
|||| |
|
|
| T |
51899366 |
tatg |
51899369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University