View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_61 (Length: 315)
Name: NF3582_high_61
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_61 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 3554787 - 3554503
Alignment:
| Q |
18 |
aggtaaaagatattcgaactcaattgaaatataaaatttaaggctaaatatattattttagcatctataaaatttaacttctatgtgaaaaatgacattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3554787 |
aggtaaaagatattcgaactcaattgaaatataaaatttaaggctaaatatattattttagcatctataaaatttaacttctatttgaaaaatgacattt |
3554688 |
T |
|
| Q |
118 |
tggactatcaacactctttgaactttgaattttatcttaa-tttcttcgagaccaactcatctaaacttttgttaaagaaaaagtgacatttgagcagca |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3554687 |
tggactatcaacactctttgagctttgaattttatcttaatttttttcgagaccaactcatctaaacttttgttaaagaaaaagtgacatttgagcagca |
3554588 |
T |
|
| Q |
217 |
taactaagtttcaaaattcttcnnnnnnnnnnnnnncataagtttcaaaattttattccatttctgatcctgattctgataagtt |
301 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3554587 |
taactaagtttcaaaattcttcaaaaaagaaaaaaacataagtttcaaaattttattccatttctgatcctgattctgataagtt |
3554503 |
T |
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