View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_66 (Length: 297)
Name: NF3582_high_66
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 44186102 - 44185818
Alignment:
| Q |
1 |
ttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttc-----acccactcgtcaggatcactttctctctttcac |
95 |
Q |
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| T |
44186102 |
ttacatggtttgagatcatagcaacgaacccatttaacaccaacaagtcaaagtatctcttctcttcacccactcgtcaggatcactttctctctttcac |
44186003 |
T |
|
| Q |
96 |
ccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctact |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44186002 |
ccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattatcatcgctcaagttaaaagaaaccatgtatggatcagctaca |
44185903 |
T |
|
| Q |
196 |
tccatatacgcccaccaatggcacaatccattcaagtacacctcatgacgaatgatcttatagtcgtcattaacagggtcatagc |
280 |
Q |
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| T |
44185902 |
ttcgtatacgcccaccaatggcacaatccattcaagtacacctcatgacgaatgatcttatagtcgtcattaatagggtcatagc |
44185818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1327255 - 1327019
Alignment:
| Q |
1 |
ttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatcactttctctctttcacccatt |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| |||||| | |
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| T |
1327255 |
ttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtaccttttcacccactcgtcaggatcagtttctatctt-cacccact |
1327157 |
T |
|
| Q |
101 |
catcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctacttccat |
200 |
Q |
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| T |
1327156 |
cattaggatagctatcttgcatatccaacggtaaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatgtatgcatcagctacattcgt |
1327057 |
T |
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| Q |
201 |
atacgcccaccaatggcacaatccattcaagtacacct |
238 |
Q |
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| T |
1327056 |
gttcgcccaccaatgacacattccattcaagtacacct |
1327019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4877794 - 4877715
Alignment:
| Q |
1 |
ttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatca |
80 |
Q |
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| T |
4877794 |
ttacatgctttgagatcaatgcaacaaacccatttaacaccaccaagtcaaagtatctattcacccactcgtcaggatca |
4877715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 4877479 - 4877438
Alignment:
| Q |
239 |
catgacgaatgatcttatagtcgtcattaacagggtcatagc |
280 |
Q |
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| T |
4877479 |
catgacgaatgatcttatagtcgttattaacagggtcatagc |
4877438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 4877718 - 4877677
Alignment:
| Q |
102 |
atcaggatagctatcttgcatatccaagggtaaatgtgtagt |
143 |
Q |
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| T |
4877718 |
atcagaatagctatcttgcatatccaagggtaaatgtgtagt |
4877677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 1326869 - 1326835
Alignment:
| Q |
244 |
cgaatgatcttatagtcgtcattaacagggtcata |
278 |
Q |
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| T |
1326869 |
cgaatgatcttatagtcgtcattaacagggtcata |
1326835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 5388269 - 5388179
Alignment:
| Q |
146 |
agaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacac |
236 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| |||| ||| || ||| |||||||||||| |||| ||||||||||||||| |
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| T |
5388269 |
agaagttctcattgctcaagttaaaagaaaccatgtatgcatcatctatatctctattcgcccaccaatgacacagtccattcaagtacac |
5388179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 5388053 - 5388017
Alignment:
| Q |
242 |
gacgaatgatcttatagtcgtcattaacagggtcata |
278 |
Q |
| |
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| T |
5388053 |
gacgaatgatcttatagtcgtcattaatagggtcata |
5388017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 26532269 - 26532180
Alignment:
| Q |
93 |
cacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgta |
182 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||| ||||||| | || ||||| |||||||||||||||||||||||| |
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| T |
26532269 |
cacccattcatcatgatatctatcttgcatatccaagggtaacagtgtagtagaaaacatctcagtgctcaagttaaaagaaaccatgta |
26532180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 26532339 - 26532281
Alignment:
| Q |
1 |
ttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctc |
59 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
26532339 |
ttacatgctttaagatcatagcaacaaacccatttaacaccaccaagtctaagtatctc |
26532281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 18011246 - 18011396
Alignment:
| Q |
31 |
catttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatcactttctctctttcacccattcatcaggatagctatcttgcatatccaagg |
130 |
Q |
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| T |
18011246 |
catttaacaccaccaagtcaaagtatctcttcgcacactcctttggagcactttctct-tttcacctactcctcacaatttctatcttgaatatccaaga |
18011344 |
T |
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| Q |
131 |
gtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgta |
182 |
Q |
| |
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||||||| |||| ||||| |||| || |||||||||||||| |||||| |
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| T |
18011345 |
gtaaatgcttagtaaagaacacctcactgcacaagttaaaagaaatcatgta |
18011396 |
T |
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