View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_7 (Length: 623)
Name: NF3582_high_7
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 10 - 604
Target Start/End: Complemental strand, 1320337 - 1319741
Alignment:
| Q |
10 |
gcagagataaaacatcaacaatggagttggtagaaaaatgataataacgagagaatcaaaccactgccaaaaatcttttgacaaaagatcaatgcagata |
109 |
Q |
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| T |
1320337 |
gcagagataaaacatcaacaatggagttggtagaaaaatgataataacgagagaatcaaaccactgccaaaaatcttttgacaaaagatcaatgcagata |
1320238 |
T |
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| Q |
110 |
ggctacaaatggaaacaatattttaaaattagacattgtgagtatattttttctgactttgtagattgttctcaaatagaattataacgttaatatttta |
209 |
Q |
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| T |
1320237 |
ggctacaaatggaaacaatattttaaaattagacattgtgagtatattttttctgactttttagattgttctcaaatagaattataacgttaatatttta |
1320138 |
T |
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| Q |
210 |
aatatggtcatgactcttgacaaaatttacttatataatctttatgataaatgttagagactaaattgataactaagccctagttaattttttaaatata |
309 |
Q |
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| T |
1320137 |
aaaatggtcatgactcttgacgaaatttacttatataatctttatgataaatgttagagactaaattgataactaa-acctagttaattttttaaatata |
1320039 |
T |
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| Q |
310 |
attacctgatgatagttaatagtaaatggttaaatacaaagagcaacttaacaatctaatag--attttgtttttgaaagattaacaatctaatagatag |
407 |
Q |
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| T |
1320038 |
atgacctgatgataattaatagtaaatggttaaatacaaatagcaacttaacaatctaatagtttttttttttttgaaagattaacaatctaatagatag |
1319939 |
T |
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| Q |
408 |
aatcaaatgatcgttttaaaaaattcataatc-tataaacctattttgagaacgcaaaatcatggactaattggtttactttacacacataattttagtg |
506 |
Q |
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| T |
1319938 |
aatcaaatgatcgttttaaaaaattcataatcttataaacctattttgagaacgcaaaatcatggactaattggtttactttacacacataattttagtg |
1319839 |
T |
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| Q |
507 |
tctcgatgtccttttaggtcgttaacaacttgtcagaactagctatatgacttgaatataaaatatacatacaggacaaacttggaatttcccatcac |
604 |
Q |
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| T |
1319838 |
tctcgatatccttttaggtcgttaacaacttgtcagaactagctatatgacttgaatataaaatatacatacaggacaaacttggaatttcccatcac |
1319741 |
T |
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