View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_72 (Length: 284)
Name: NF3582_high_72
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_72 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 41933550 - 41933289
Alignment:
| Q |
8 |
agagaagaaagaaagctacttgtaacatcaatgtcaccaatattatcaaccacaatgtcattcaagcatttttccatatttttatattgaatcaaaataa |
107 |
Q |
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| T |
41933550 |
agagaagaaagaaagctacttgtgacatcaatgtcaccaatattatcaaccacaatgtcacacaagcaataccccagatttttatattgaattaaaataa |
41933451 |
T |
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| Q |
108 |
attttctaaaattggcttataatattaagagtatttccttttataaacttgttctagatcgtatatttatttaatgtgacttgtannnnnnncaatacac |
207 |
Q |
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| T |
41933450 |
attttataaaattggcttataatattatgagtatttccttttataaacttgttttagatcgtatatttatttaatgtgacttgtatttttctcaatacac |
41933351 |
T |
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| Q |
208 |
ttctcatatccaacattacaaggaataataaatgaacggtctgaacgacagagtttaatact |
269 |
Q |
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| T |
41933350 |
ttctcatatccaacattacaaggaataataaatgaacggcccgaacgacagagtttaatact |
41933289 |
T |
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