View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_76 (Length: 278)
Name: NF3582_high_76
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_76 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 31098081 - 31098334
Alignment:
| Q |
18 |
aattgaatctcagtatgtgaacacatcaccttctcatgttatgtccgtaaacaatcaacttcaactctgcacaaagggagaaaaatcaatcaccgattac |
117 |
Q |
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| T |
31098081 |
aattgaatctcggtatgtgaacacatcaccttctcatgttatgtccgtaaacaatcaacttcaactctgcacaaagggagaaaaatcaatcaccgattac |
31098180 |
T |
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| Q |
118 |
ttgttgttctcatttaaaagtcttgcggatgaacttgttgttattgattgaacccttttagatgatgattttacccttcatattctgaatggtctttgca |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31098181 |
ttgttgttctcatttagaagtcttgcggatgaacttgttgttattgattgaacccttttagatgatgattttacccttcatattatgaatggtctttgca |
31098280 |
T |
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| Q |
218 |
cttaaaatcgcggcacttcagactccattcgcacatgtcaacacccctttgctt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098281 |
cttaaaatcgcggcacttcagactccattcgcacatgtcaacacccctttgctt |
31098334 |
T |
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