View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_high_80 (Length: 270)
Name: NF3582_high_80
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_80 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 50247162 - 50247414
Alignment:
| Q |
1 |
cgactcccttacccaaatttctactacacacttgaggatctcgttgcatcatacacaccttcgattacatactcaatacatcgatcctctctcataattg |
100 |
Q |
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| T |
50247162 |
cgactcccttacccaaatttctactacacacttgaggatctcgttgcatcatacacaccttcgattacatactcaatacatcgatcctctctcataattg |
50247261 |
T |
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| Q |
101 |
gcacatcttcaagaagtgcaatcaacgcgatgatgatgctagcgacgtatgctgccatatgtcgccatgtagggttaccgtttcggtatccaggaaatag |
200 |
Q |
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| T |
50247262 |
gcgcatcttcaagaagtgcaatcaacgcgatgatgatgctagcgacgtatgctgcgatatgtcgccatgtagggttaccgtttcggtatccaggaaatag |
50247361 |
T |
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| Q |
201 |
atacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaagc |
253 |
Q |
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| T |
50247362 |
atacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaagc |
50247414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 50254299 - 50254551
Alignment:
| Q |
1 |
cgactcccttacccaaatttctactacacacttgaggatctcgttgcatcatacacaccttcgattacatactcaatacatcgatcctctctcataattg |
100 |
Q |
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| T |
50254299 |
cgactctcttatccaaatttctattacgcgcttgaggatctcgttaaatcctatgcaccttcaattacatactcaatacatcgttcctctatcataatag |
50254398 |
T |
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| Q |
101 |
gcacatcttcaagaagtgcaatcaacgcgatgatgatgctagcgacgtatgctgccatatgtcgccatgtagggttaccgtttcggtatccaggaaatag |
200 |
Q |
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| T |
50254399 |
gtgcttcgccaagaagtgcatacaacatgctgatggtactagcgacatacgctgccatatgtcgccaggtaggattaccgtttcgttttccaggaaatag |
50254498 |
T |
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| Q |
201 |
atacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaagc |
253 |
Q |
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| T |
50254499 |
gtacacttgggagcatttctgtgatatgacggatgctcgtgtgctggcaaagc |
50254551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 27643729 - 27643479
Alignment:
| Q |
1 |
cgactcccttacccaaatttctactacacacttgaggatctcgttgcatcatacacaccttcgattacatactcaatacatcgatcctctctcataattg |
100 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| ||| |||| || | |||||| |||||||||| ||||||||||| ||| ||||||| | |
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| T |
27643729 |
cgactcccttacccaaatttctattacgtgcttgaggatctagttacatcctatgccccttcggttacatactcgatacatcgatcatctatcataatag |
27643630 |
T |
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| Q |
101 |
gcacatcttcaagaagtgcaatcaacgcgatgatgatgctagcgacgtatgctgccatatgtcgccatgtagggttaccgtttcggtatccaggaaatag |
200 |
Q |
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| | || |||| |||||| ||||| | | |||| |||||| |||||||||||||||| |||| |||||||||| ||||| ||||||||||| | |
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| T |
27643629 |
gtatgtcaccaaggagtgcacacaacgtgctaatgaagctagcagtatatgctgccatatgtcaccatttagggttaccttttcgttatccaggaaacaa |
27643530 |
T |
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| Q |
201 |
atacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaa |
251 |
Q |
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|||||||||||||||||| ||||||||| | ||||| || ||||| ||||| |
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| T |
27643529 |
atacacttgggagcatttctgtgatatgacggatgcgggcgtgcttgcaaa |
27643479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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