View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_high_83 (Length: 263)
Name: NF3582_high_83
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_high_83 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 51898806 - 51899055
Alignment:
| Q |
1 |
agatggctttgtggactttgtgttgaagcagtgaaagatgaagttgttagatcagagagactcatcaccattgaagaagcactcaatcgccatatcagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51898806 |
agatggctttgtggactttgtgttgaagcagtgaaagatgaagttgttagatcagagagactcatcaccattgaagaagcactcaatcgccatatcagtt |
51898905 |
T |
|
| Q |
101 |
tctgtaaagagttcagatcatcatcatccactgttttgaataaaacagaacaccctataattctcatgagtcgaagaattcgtcggagtttggattgccc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51898906 |
tctgtaaagagttcagatcatcatcatccactgttttgaataaaacagaacaccctatcattctcatgagtcgaagaattcgtcggagtttggattgccc |
51899005 |
T |
|
| Q |
201 |
tagaccgcctcttcgatcaaactcaaccggagttcttcctgctgttgatg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51899006 |
tagaccgcctcttcgatcaaactcaaccggagttcttcctgctgttgatg |
51899055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 51887250 - 51887372
Alignment:
| Q |
3 |
atggctttgtggactttgtgttgaagcagtgaaagatgaagttgttagatcagagagactcatcaccattgaagaagcactcaatcgccatatcagtttc |
102 |
Q |
| |
|
||||||||| ||| | |||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| | ||||| || |||| |||| |
|
|
| T |
51887250 |
atggctttgcggattgtgtgctgaagcagtgaaagatgaggttgttagatcaaagagacgtatcaccattgaagaagctttgaatcgacacatcaatttc |
51887349 |
T |
|
| Q |
103 |
tgtaaagagttcagatcatcatc |
125 |
Q |
| |
|
| ||||||||| ||||||||||| |
|
|
| T |
51887350 |
tataaagagtttagatcatcatc |
51887372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University