View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3582_high_9 (Length: 611)

Name: NF3582_high_9
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3582_high_9
NF3582_high_9
[»] chr1 (3 HSPs)
chr1 (19-228)||(2567858-2568067)
chr1 (304-443)||(2568086-2568225)
chr1 (510-582)||(2568295-2568367)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 2567858 - 2568067
Alignment:
Q  19 atattgcatttatttatattgtaattatcttgtgtggagctatcatattcataggaccagaaaagaaagaaatagaggccagggttcttggacttggacc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2567858 atattgcatttatttatattgtaattatcttgtgtggagctatcatattcataggaccagaaaagaaagaaatagaggccagggttcttggacttggacc 2567957  T
Q  119 ccatgccaccttgttgtccatgttcaactttgtgggtaaggattttccaacaaaagccattagaaatattttgaaatacatcgtctttatataagtcggt 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2567958 ccatgccaccttgttgtccatgttcaattttgtgggtaaggattttccaacaaaagccattagaaatattttgaaatacatcgtctttatataagtcggt 2568057  T
Q  219 taaatcagac 228  Q
    ||||||||||    
T  2568058 taaatcagac 2568067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 304 - 443
Target Start/End: Original strand, 2568086 - 2568225
Alignment:
Q  304 cctattgacacgcttaaacattattttgatgcaacaattataaatatccgatcatattcacaataatattatctaatttttatattgttgtaatgtattc 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2568086 cctattgacacgcttaaacattattttgatgcaacaattataaatatccgatcatattcacaataatattatctaatttttatattgttgtaatgtattc 2568185  T
Q  404 ttgcaaaacttgtaaacttgtttgtaagggtatgaaaatc 443  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2568186 ttgcaaaacttgtaaacttgtttgtaagggtatgaaaatc 2568225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 510 - 582
Target Start/End: Original strand, 2568295 - 2568367
Alignment:
Q  510 caatgcactgcagctcatccaattgtcaaggatgatgtaatgtagaatctaacgatttgtgcaaagatattga 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2568295 caatgcactgcagctcatccaattgtcaaggatgatgtaatgtagaatctaacgatttgtgcaaagatattga 2568367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University