View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3582_low_1 (Length: 1002)
Name: NF3582_low_1
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 412 - 962
Target Start/End: Complemental strand, 40599582 - 40599038
Alignment:
| Q |
412 |
tttatatgcccacagattttccgaaccaagattaataattgaagtaggaccccattctatcttctctgtattttcgttgaagaaacaaaccaggttgact |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40599582 |
tttatatgcccacagattttccgaaccaagattaataattgaagtaggaccccattctatcttctctgtattttcgttgaagaaacaaaccaggttgact |
40599483 |
T |
|
| Q |
512 |
acttgtttctttcttgtaagttttggtgagttcaagtttgaatcagcttcttatttataaatgaagcttcctatgaaatgaaataatcacatagccatca |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
40599482 |
acttgtttctttcttgtaagttttggtgagttcaagtttgaatcagcttcttatttataaatgaagcttcctatgaaat-----aatcacatagccatca |
40599388 |
T |
|
| Q |
612 |
ttattgttactacacaaaagtgtggacttgacttgatgatatctcatatatagagtctagttggaagctgatcacatcacacttcacaatatatacatct |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40599387 |
ttattgttactacacaaaagtgtggacttgacttgatgatatctcatatatagagtctagttggaagctgatcacatcacacttcacaatatatacatct |
40599288 |
T |
|
| Q |
712 |
accactcaccctccaaccatttatttgttgactatccttctactttgaagctaagagttgaagctaagagacattcatttattcaaaattcattgataca |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40599287 |
accactcaccctccaaccatttatttgttgactaaccttctactttgaagctaagagttgaagctaagagacattcatttattcaaaattcattgataca |
40599188 |
T |
|
| Q |
812 |
tcctttctccatgctgcaacatgtgtgagttccaattcctttcatttaaatttttgtttcagttactctctccattttaaagtgcatacagtcgttcaaa |
911 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |
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| T |
40599187 |
tcctttatgcatgctgcaacatgtgtgagttccaattcctttcatttaaatttttgtttcagttactctctccgttttaaattgcatac-gtcgttcaaa |
40599089 |
T |
|
| Q |
912 |
gtctatacacacagattaagaaatgcaataaaattgtatgtaaaacaacat |
962 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40599088 |
gtctgtacacacagagtaagaaatgcaataaaattgtatgtaaaacaacat |
40599038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 182 - 320
Target Start/End: Complemental strand, 40599845 - 40599708
Alignment:
| Q |
182 |
ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccattacattccaactaccaacccaagtgcaaaaaccttat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40599845 |
ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcaaaaaa-gacaccattacattccaactaccaacccaagtgcaaaaaccttat |
40599747 |
T |
|
| Q |
282 |
gtaaccaacactaataaccacccacatcatcgttaactc |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40599746 |
gtaaccaacactaataaccacccacatcatcgttgactc |
40599708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 182 - 320
Target Start/End: Complemental strand, 42268749 - 42268611
Alignment:
| Q |
182 |
ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctta |
280 |
Q |
| |
|
|||||||||||| |||| | ||| ||||||||||||||||||||| || ||||||||| || || ||||| ||||||||| ||||||| || |
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|
| T |
42268749 |
ccaactcacaagtttctaatcattaacaccaaaatatcaccaccacgcaaaaaa-gacaccatttacgtttcaactcccaacccaacaacaaaaacaata |
42268651 |
T |
|
| Q |
281 |
tgtaaccaacactaataaccacccacatcatcgttaactc |
320 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42268650 |
tgtaaccaacaccaataaccacccacatcatcgttaactc |
42268611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 40599920 - 40599872
Alignment:
| Q |
107 |
gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40599920 |
gacctagtatcaacaccaccgtgaaaaccaccacgaagcaccacaaacg |
40599872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 40681012 - 40681057
Alignment:
| Q |
107 |
gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaa |
152 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||| |||||||||||| |
|
|
| T |
40681012 |
gaccaagtatcaacaccaccataaaaaccaccatgaaacaccacaa |
40681057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 182 - 316
Target Start/End: Complemental strand, 43032415 - 43032282
Alignment:
| Q |
182 |
ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctta |
280 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||| || |||||||| |||||| |||| ||||||||| |||||| ||||| |
|
|
| T |
43032415 |
ccaacacacaagcttctcatcatcaacaccaaaatatcaccaccacgcaaaaaat-acaccatttacattctaactcccaacccaacagcaaaa-cctta |
43032318 |
T |
|
| Q |
281 |
tgtaaccaacactaataaccacccacatcatcgtta |
316 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43032317 |
tgtaaccaacaccaataaccacccacatcatcgtta |
43032282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 320
Target Start/End: Original strand, 24718209 - 24718346
Alignment:
| Q |
182 |
ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccatt-acattccaactaccaacccaagtgcaaaaacctta |
280 |
Q |
| |
|
||||||||||||||||| | ||| || |||||||||||||||||| | ||||||||| || || ||||| ||||||||| ||||||| | |
|
|
| T |
24718209 |
ccaactcacaagcttctaatcattaataccaaaatatcaccaccacacaaaaaa-gacaccatttacgtttcaactcccaacccaacaacaaaaacaa-a |
24718306 |
T |
|
| Q |
281 |
tgtaaccaacactaataaccacccacatcatcgttaactc |
320 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
24718307 |
tgtaaccaacaccaataaccacccacatcatcgttaactc |
24718346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 182 - 316
Target Start/End: Original strand, 31699417 - 31699551
Alignment:
| Q |
182 |
ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacacca-ttacattccaactaccaacccaagtgcaaaaacctta |
280 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||| | ||||||| |||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
31699417 |
ccaactcacaagcttctaatcatcaacaccaaaatatcaccaccatac-aaaaaagacaccatttacgttccaactcccaacccaacaacaaaaacctta |
31699515 |
T |
|
| Q |
281 |
tgtaaccaacactaataaccacccacatcatcgtta |
316 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
31699516 |
cgtagccaacacctataagcacccacatcatcgtta |
31699551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 9910838 - 9910966
Alignment:
| Q |
182 |
ccaactcacaagcttctcaacatcaacaccaaaatatcaccaccatgcnnnnnnngacaccattaca-ttccaactaccaacccaagtgcaaaaacctta |
280 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||||||||||||||| || |||||||| | ||| |||| ||||||||| | |||||||||| |
|
|
| T |
9910838 |
ccaacttacaagcttctaatcatcaacaccaaaatatcaccaccacgcaaaaaat-acaccatttaagttcaaactcccaacccaacaggaaaaacctta |
9910936 |
T |
|
| Q |
281 |
tgtaaccaacactaataaccacccacatca |
310 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
9910937 |
tgtaaccaacacctataaccacccacatca |
9910966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 9910758 - 9910808
Alignment:
| Q |
107 |
gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga |
157 |
Q |
| |
|
|||| ||||||||||||| | || ||||||||||||| ||||||||||||| |
|
|
| T |
9910758 |
gacccagtatcaacaccatcatggaaaccaccacgaagcaccacaaacgga |
9910808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 320
Target Start/End: Complemental strand, 2077300 - 2077225
Alignment:
| Q |
244 |
ttacattccaactaccaacccaagtgcaaaaaccttatgtaaccaacactaataaccacccacatcatcgttaactc |
320 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
2077300 |
ttacattccaaatcccaacccaacatcaaaaacct-atgtaaccatcaccaataaccacccacatcatcgttaactc |
2077225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 15496015 - 15496060
Alignment:
| Q |
107 |
gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaa |
152 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
15496015 |
gaccaagtatcagcaccaccatgaaaaccaccacgaaacaccacaa |
15496060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 2077412 - 2077362
Alignment:
| Q |
107 |
gacctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga |
157 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||||||| |||||||||||| |
|
|
| T |
2077412 |
gacccagtatcaacaccaccatggaaaccaccacgaagtaccacaaacgga |
2077362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 23635972 - 23636021
Alignment:
| Q |
108 |
acctagtatcaacaccaccgtgaaaaccaccacgaaacaccacaaacgga |
157 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||| ||||||||||||| |
|
|
| T |
23635972 |
acctagtatcaacaccaccatggaaaccaccatgaagcaccacaaacgga |
23636021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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