View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3582_low_102 (Length: 250)
Name: NF3582_low_102
Description: NF3582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3582_low_102 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 47027655 - 47027572
Alignment:
| Q |
158 |
aaagattaatatattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaatgttatattctt |
241 |
Q |
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| T |
47027655 |
aaagattaatatattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaatgttattttctt |
47027572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 47027847 - 47027683
Alignment:
| Q |
1 |
ctctgcgcgccaatgctgtattttccaataactcaacgacttatcaaaacagcatatacaa----tagtttct---tatcttgttttgaggaattaataa |
93 |
Q |
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| T |
47027847 |
ctctgagcgccaatgctgtattttccaataactcaacgacttatcaaaat----tatacaagttgtagaaacaacatatcttgttttgaggaattaataa |
47027752 |
T |
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| Q |
94 |
gtgactttaatttgtatgatttcttatcttatttcaagaa----taaggaaaggtgaatcaatctttta |
158 |
Q |
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| T |
47027751 |
gtgagtttaatttgtatgatttcttatcttatttcaagaataattaaggaaaggtgaatcaatctttta |
47027683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 36582466 - 36582527
Alignment:
| Q |
169 |
tattacctggagctgctgcctttcagctggtgaacaagagcatccacccttttaaaatcaat |
230 |
Q |
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| T |
36582466 |
tattacctggagctgctacctttcaattggtgaacatgagcatccattctcttaaaatcaat |
36582527 |
T |
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